Fatal error: cs.h not found #502

masterdot · 2020-02-01T11:40:13Z

The file is truly not there and I didnt find anything helping with this.
Any help appreciated :)

CMake Deprecation Warning at CMakeLists.txt:64 (cmake_policy):
  The OLD behavior for policy CMP0020 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


-- The imported target "vtkRenderingPythonTkWidgets" references the file
   "/usr/lib/x86_64-linux-gnu/libvtkRenderingPythonTkWidgets.so"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/cmake/vtk-6.3/VTKTargets.cmake"
but not all the files it references.

-- The imported target "vtk" references the file
   "/usr/bin/vtk"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/cmake/vtk-6.3/VTKTargets.cmake"
but not all the files it references.

-- PCL definitions don't contain "-march=native", make sure all libraries using Eigen are also compiled without that flag to avoid some segmentation faults (with gdb referring to some Eigen functions).
-- Found Sqlite3: /usr/include /usr/lib/x86_64-linux-gnu/libsqlite3.so
-- Found OpenMP_C: -fopenmp  
-- Found OpenMP_CXX: -fopenmp  
-- Found OpenMP: TRUE   
-- Found OpenMP
-- Found OpenCV: /usr/local/include/opencv4
-- Found PCL: /usr/include/pcl-1.8;/usr/include/eigen3;/usr/include;/usr/include/ni;/usr/include/openni2;/usr/include/vtk-6.3;/usr/include/freetype2;/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi;/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent;/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include;/usr/lib/x86_64-linux-gnu/openmpi/include;/usr/include/python2.7;/usr/include/x86_64-linux-gnu;/usr/include/hdf5/openmpi;/usr/include/libxml2;/usr/include/jsoncpp;/usr/include/tcl
-- Found ZLIB: /usr/include
-- VTK_RENDERING_BACKEND=OpenGL
-- Found Freenect: /usr/include
-- Found OpenNI2: /usr/include/openni2
-- Found DC1394: /usr/include/dc1394
-- Could NOT find CSPARSE (missing: CSPARSE_INCLUDE_DIR) 
CMake Warning at cmake_modules/FindG2O.cmake:122 (MESSAGE):
  Latest g2o version detected with c++11 interface (config file:
  /usr/local/include/g2o/config.h).  Make sure g2o is built with
  "-DBUILD_WITH_MARCH_NATIVE=OFF" to avoid segmentation faults caused by
  Eigen.
Call Stack (most recent call first):
  CMakeLists.txt:374 (FIND_PACKAGE)


-- Found g2o: /usr/local/include
-- GTSAM include directory:  /usr/local/lib/cmake/GTSAM/../../../include;/usr/include;/usr/include/eigen3
-- FlyCapture2_INCLUDE_DIR=FlyCapture2_INCLUDE_DIR-NOTFOUND
-- FlyCapture2_LIBRARY=FlyCapture2_LIBRARY-NOTFOUND
-- Triclops_INCLUDE_DIR=Triclops_INCLUDE_DIR-NOTFOUND
-- Triclops_LIBRARY=Triclops_LIBRARY-NOTFOUND
-- FlyCaptureBridge_LIBRARY=FlyCaptureBridge_LIBRARY-NOTFOUND
-- Architecture: x86_64
-- Found Pthreads
CMake Deprecation Warning at tools/KittiDataset/CMakeLists.txt:14 (cmake_policy):
  The OLD behavior for policy CMP0020 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


CMake Deprecation Warning at tools/RgbdDataset/CMakeLists.txt:14 (cmake_policy):
  The OLD behavior for policy CMP0020 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


-- yaml-cpp not found, euroc_dataset tool won't be built...
CMake Deprecation Warning at tools/Recovery/CMakeLists.txt:12 (cmake_policy):
  The OLD behavior for policy CMP0020 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


CMake Deprecation Warning at tools/Reprocess/CMakeLists.txt:12 (cmake_policy):
  The OLD behavior for policy CMP0020 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


CMake Deprecation Warning at tools/DetectMoreLoopClosures/CMakeLists.txt:12 (cmake_policy):
  The OLD behavior for policy CMP0020 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


CMake Deprecation Warning at tools/Report/CMakeLists.txt:16 (cmake_policy):
  The OLD behavior for policy CMP0020 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


CMake Deprecation Warning at examples/BOWMapping/CMakeLists.txt:27 (cmake_policy):
  The OLD behavior for policy CMP0020 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


CMake Deprecation Warning at examples/RGBDMapping/CMakeLists.txt:41 (cmake_policy):
  The OLD behavior for policy CMP0020 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


CMake Deprecation Warning at examples/WifiMapping/CMakeLists.txt:35 (cmake_policy):
  The OLD behavior for policy CMP0020 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


CMake Deprecation Warning at examples/NoEventsExample/CMakeLists.txt:35 (cmake_policy):
  The OLD behavior for policy CMP0020 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


-- --------------------------------------------
-- Info :
--   Version : 0.19.6
--   CMAKE_INSTALL_PREFIX = /usr/local
--   CMAKE_BUILD_TYPE =     Release
--   CMAKE_INSTALL_LIBDIR = lib
--   BUILD_APP =            ON
--   BUILD_TOOLS =          ON
--   BUILD_EXAMPLES =       ON
--   BUILD_SHARED_LIBS =    ON
--   CMAKE_CXX_FLAGS =  -fmessage-length=0  -fopenmp -std=c++11
--   FLANN_KDTREE_MEM_OPT = OFF
--   PCL_DEFINITIONS =  ;-DDISABLE_ENSENSO;-DDISABLE_DAVIDSDK;-DDISABLE_DSSDK;-DDISABLE_PCAP;-DDISABLE_PNG;-DDISABLE_LIBUSB_1_0;-DFLANN_STATIC;-Dqh_QHpointer;-DDISABLE_RSSDK
--   PCL_VERSION = 1.8.1
-- 
-- Optional dependencies ('*' affects some default parameters) :
--  *With OpenCV 4 xfeatures2d module (SIFT/SURF/BRIEF/FREAK) = YES (License: Non commercial)
--   With Qt5                  = YES (License: Open Source or Commercial)
--   With VTK 6.3              = YES (License: BSD)
--   With external SQLite3     = YES (License: Public Domain)
--   With ORB OcTree           = YES (License: GPLv3)
--   With Madgwick             = YES (License: GPL)
--   With FastCV               = NO (FastCV not found)
-- 
--  Solvers:
--   With TORO                 = YES (License: Creative Commons [Attribution-NonCommercial-ShareAlike])
--  *With g2o                  = YES (License: BSD)
--  *With GTSAM                = YES (License: BSD)
--  *With Ceres                = NO (Ceres not found)
--   With VERTIGO              = YES (License: GPLv3)
--   With cvsba                = NO (cvsba not found)
--  *With libpointmatcher      = NO (libpointmatcher not found)
-- 
--  Reconstruction Approaches:
--   With OCTOMAP              = NO (octomap not found)
--   With CPUTSDF              = NO (CPUTSDF not found)
--   With OpenChisel           = NO (open_chisel not found)
--   With AliceVision          = NO (WITH_ALICE_VISION=OFF)
-- 
--  Camera Drivers:
--   With Freenect             = YES (License: Apache v2 and/or GPLv2)
--   With OpenNI2              = YES (License: Apache v2)
--   With Freenect2            = NO (libfreenect2 not found)
--   With Kinect for Windows 2 = NO (Kinect for Windows 2 SDK not found)
--   With Kinect for Azure     = NO (Kinect for Azure SDK not found)
--   With dc1394               = YES (License: LGPL)
--   With FlyCapture2/Triclops = NO (Point Grey SDK not found)
--   With ZED                  = NO (ZED sdk not found)
--   With RealSense            = NO (librealsense not found)
--   With RealSense2           = NO (librealsense2 not found)
-- 
--  Odometry Approaches:
--   With loam_velodyne        = NO (loam_velodyne not found)
--   With libfovis             = NO (libfovis not found)
--   With libviso2             = NO (libviso2 not found)
--   With dvo_core             = NO (dvo_core not found)
--   With okvis                = NO (okvis not found)
--   With msckf_vio            = NO (WITH_MSCKF_VIO=OFF)
--   With VINS-Fusion          = NO (VINS-Fusion not found)
--   With ORB_SLAM2            = NO (WITH_G2O should be OFF as ORB_SLAM2 uses its own g2o version)
-- --------------------------------------------
-- Configuring done
-- Generating done
-- Build files have been written to: /home/3dscan/rtabmap/build
linux:~/3dscan/rtabmap/build$ make -j4
[  4%] Built target rtabmap_utilite
[  4%] Built target res_tool
[  5%] Built target imagesJoiner
[  5%] Built target extractObject
[  5%] Building CXX object corelib/src/CMakeFiles/rtabmap_core.dir/Odometry.cpp.o
[  5%] Building CXX object corelib/src/CMakeFiles/rtabmap_core.dir/optimizer/OptimizerG2O.cpp.o
[  6%] Building CXX object corelib/src/CMakeFiles/rtabmap_core.dir/OdometryThread.cpp.o
[  6%] Building CXX object corelib/src/CMakeFiles/rtabmap_core.dir/odometry/OdometryF2M.cpp.o
In file included from /usr/local/include/g2o/solvers/csparse/csparse_helper.h:30:0,
                 from /usr/local/include/g2o/solvers/csparse/linear_solver_csparse.h:30,
                 from /home/3dscan/rtabmap/corelib/src/optimizer/OptimizerG2O.cpp:66:
/usr/local/include/g2o/solvers/csparse/csparse_extension.h:27:10: fatal error: cs.h: Datei oder Verzeichnis nicht gefunden
 #include <cs.h>
          ^~~~~~
compilation terminated.
corelib/src/CMakeFiles/rtabmap_core.dir/build.make:1387: recipe for target 'corelib/src/CMakeFiles/rtabmap_core.dir/optimizer/OptimizerG2O.cpp.o' failed
make[2]: *** [corelib/src/CMakeFiles/rtabmap_core.dir/optimizer/OptimizerG2O.cpp.o] Error 1
make[2]: *** Auf noch nicht beendete Prozesse wird gewartet …
CMakeFiles/Makefile2:267: recipe for target 'corelib/src/CMakeFiles/rtabmap_core.dir/all' failed
make[1]: *** [corelib/src/CMakeFiles/rtabmap_core.dir/all] Error 2
Makefile:151: recipe for target 'all' failed
make: *** [all] Error 2
:~/3dscan/rtabmap/build$

The text was updated successfully, but these errors were encountered:

matlabbe · 2020-02-03T23:09:07Z

cs.h is located by default here: /usr/include/suitesparse/cs.h. Normally the include directory of cs.h should be added to compilation:

rtabmap/cmake_modules/FindG2O.cmake

Line 2 in e2e2227

    
           FIND_PATH(CSPARSE_INCLUDE_DIR NAMES cs.h PATH_SUFFIXES suitesparse csparse EXTERNAL/suitesparse EXTERNAL/csparse

Make sure libsuitesparse-dev is installed:

sudo apt install libsuitesparse-dev

masterdot · 2020-02-04T14:22:40Z

Hey there,
that did work and took my to another issue:
In file included from /usr/local/include/opencv4/opencv2/core/core_c.h:48:0, from /usr/local/include/opencv4/opencv2/imgproc/types_c.h:46, from /usr/local/include/opencv4/opencv2/imgproc/imgproc_c.h:46, from /home/masterdot/3dscan/rtabmap/guilib/src/CalibrationDialog.cpp:33: /usr/local/include/opencv4/opencv2/core/types_c.h:1169:16: note: candidate: CvSize::CvSize() typedef struct CvSize ^~~~~~ /usr/local/include/opencv4/opencv2/core/types_c.h:1169:16: note: candidate expects 0 arguments, 1 provided /usr/local/include/opencv4/opencv2/core/types_c.h:1169:16: note: candidate: constexpr CvSize::CvSize(const CvSize&) /usr/local/include/opencv4/opencv2/core/types_c.h:1169:16: note: no known conversion for argument 1 from ‘cv::Size {aka cv::Size_<int>}’ to ‘const CvSize&’ /usr/local/include/opencv4/opencv2/core/types_c.h:1169:16: note: candidate: constexpr CvSize::CvSize(CvSize&&) /usr/local/include/opencv4/opencv2/core/types_c.h:1169:16: note: no known conversion for argument 1 from ‘cv::Size {aka cv::Size_<int>}’ to ‘CvSize&&’ In file included from /home/masterdot/3dscan/rtabmap/guilib/src/CalibrationDialog.cpp:40:0: /home/masterdot/3dscan/rtabmap/guilib/src/opencv/stereoRectifyFisheye.h:1214:35: error: ‘c_T’ was not declared in this scope CvSize(imageSize), &c_R, &c_T, &c_R1, &c_R2, &c_P1, &c_P2, p_Q, flags, alpha, ^~~ /home/masterdot/3dscan/rtabmap/guilib/src/opencv/stereoRectifyFisheye.h:1214:35: note: suggested alternative: ‘c_Q’ CvSize(imageSize), &c_R, &c_T, &c_R1, &c_R2, &c_P1, &c_P2, p_Q, flags, alpha, ^~~ c_Q /home/masterdot/3dscan/rtabmap/guilib/src/opencv/stereoRectifyFisheye.h:1214:48: error: ‘c_R2’ was not declared in this scope CvSize(imageSize), &c_R, &c_T, &c_R1, &c_R2, &c_P1, &c_P2, p_Q, flags, alpha, ^~~~ /home/masterdot/3dscan/rtabmap/guilib/src/opencv/stereoRectifyFisheye.h:1214:48: note: suggested alternative: ‘c_R1’ CvSize(imageSize), &c_R, &c_T, &c_R1, &c_R2, &c_P1, &c_P2, p_Q, flags, alpha, ^~~~ c_R1 /home/masterdot/3dscan/rtabmap/guilib/src/opencv/stereoRectifyFisheye.h:1214:55: error: ‘c_P1’ was not declared in this scope CvSize(imageSize), &c_R, &c_T, &c_R1, &c_R2, &c_P1, &c_P2, p_Q, flags, alpha, ^~~~ /home/masterdot/3dscan/rtabmap/guilib/src/opencv/stereoRectifyFisheye.h:1214:55: note: suggested alternative: ‘c_R1’ CvSize(imageSize), &c_R, &c_T, &c_R1, &c_R2, &c_P1, &c_P2, p_Q, flags, alpha, ^~~~ c_R1 /home/masterdot/3dscan/rtabmap/guilib/src/opencv/stereoRectifyFisheye.h:1214:62: error: ‘c_P2’ was not declared in this scope CvSize(imageSize), &c_R, &c_T, &c_R1, &c_R2, &c_P1, &c_P2, p_Q, flags, alpha, ^~~~ /home/masterdot/3dscan/rtabmap/guilib/src/opencv/stereoRectifyFisheye.h:1214:62: note: suggested alternative: ‘c_Q’ CvSize(imageSize), &c_R, &c_T, &c_R1, &c_R2, &c_P1, &c_P2, p_Q, flags, alpha, ^~~~ c_Q /home/masterdot/3dscan/rtabmap/guilib/src/opencv/stereoRectifyFisheye.h:1215:28: error: no matching function for call to ‘CvSize::CvSize(cv::Size&)’ CvSize(newImageSize)); ^ In file included from /usr/local/include/opencv4/opencv2/core/core_c.h:48:0, from /usr/local/include/opencv4/opencv2/imgproc/types_c.h:46, from /usr/local/include/opencv4/opencv2/imgproc/imgproc_c.h:46, from /home/masterdot/3dscan/rtabmap/guilib/src/CalibrationDialog.cpp:33: /usr/local/include/opencv4/opencv2/core/types_c.h:1169:16: note: candidate: CvSize::CvSize() typedef struct CvSize ^~~~~~ /usr/local/include/opencv4/opencv2/core/types_c.h:1169:16: note: candidate expects 0 arguments, 1 provided /usr/local/include/opencv4/opencv2/core/types_c.h:1169:16: note: candidate: constexpr CvSize::CvSize(const CvSize&) /usr/local/include/opencv4/opencv2/core/types_c.h:1169:16: note: no known conversion for argument 1 from ‘cv::Size {aka cv::Size_<int>}’ to ‘const CvSize&’ /usr/local/include/opencv4/opencv2/core/types_c.h:1169:16: note: candidate: constexpr CvSize::CvSize(CvSize&&) /usr/local/include/opencv4/opencv2/core/types_c.h:1169:16: note: no known conversion for argument 1 from ‘cv::Size {aka cv::Size_<int>}’ to ‘CvSize&&’ [ 66%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/PostProcessingDialog.cpp.o guilib/src/CMakeFiles/rtabmap_gui.dir/build.make:720: recipe for target 'guilib/src/CMakeFiles/rtabmap_gui.dir/CalibrationDialog.cpp.o' failed make[2]: *** [guilib/src/CMakeFiles/rtabmap_gui.dir/CalibrationDialog.cpp.o] Error 1 make[2]: *** Auf noch nicht beendete Prozesse wird gewartet … /home/masterdot/3dscan/rtabmap/guilib/src/ExportBundlerDialog.cpp: In member function ‘void rtabmap::ExportBundlerDialog::exportBundler(const std::map<int, rtabmap::Transform>&, const std::multimap<int, rtabmap::Link>&, const QMap<int, rtabmap::Signature>&, const ParametersMap&)’: /home/masterdot/3dscan/rtabmap/guilib/src/ExportBundlerDialog.cpp:251:24: warning: ‘*((void*)&<anonymous> +560)’ may be used uninitialized in this function [-Wmaybe-uninitialized] if(velocity.size() == 6) ~~~~~~~~~~~~~^~ /home/masterdot/3dscan/rtabmap/guilib/src/ExportBundlerDialog.cpp:251:24: warning: ‘*((void*)&<anonymous> +568)’ may be used uninitialized in this function [-Wmaybe-uninitialized] CMakeFiles/Makefile2:341: recipe for target 'guilib/src/CMakeFiles/rtabmap_gui.dir/all' failed make[1]: *** [guilib/src/CMakeFiles/rtabmap_gui.dir/all] Error 2 Makefile:151: recipe for target 'all' failed make: *** [all] Error 2

…pencv/opencv#16046)

matlabbe · 2020-02-05T16:53:42Z

I updated the code to build with latest OpenCV version from source. See commit above.

masterdot · 2020-02-05T19:03:33Z

Ok, done with that one :)

Heres another one:
collect2: error: ld returned 1 exit status tools/KittiDataset/CMakeFiles/kitti_dataset.dir/build.make:470: recipe for target '../bin/rtabmap-kitti_dataset' failed make[2]: *** [../bin/rtabmap-kitti_dataset] Error 1 CMakeFiles/Makefile2:822: recipe for target 'tools/KittiDataset/CMakeFiles/kitti_dataset.dir/all' failed make[1]: *** [tools/KittiDataset/CMakeFiles/kitti_dataset.dir/all] Error 2 Makefile:151: recipe for target 'all' failed make: *** [all] Error 2

Sorry for the problems...

matlabbe · 2020-02-05T21:40:39Z

It says there is an error in the generated Makefiles, but not actually saying what is the error... Try cleanup the build directory and remake.

rm -rf rtabmap/build/*
cd rtabmap/build
cmake ..
make -j4

masterdot · 2020-02-05T22:47:17Z

I'm sorry to bother you again... Last time I tried to clear the build folder didn't work, but this time it did. Sorry for this beginner's error -. -

The next one is this:
[ 70%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/__/include/rtabmap/gui/moc_MainWindow.cpp.o [ 71%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/__/include/rtabmap/gui/moc_PreferencesDialog.cpp.o [ 71%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/__/include/rtabmap/gui/moc_DatabaseViewer.cpp.o [ 71%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/__/include/rtabmap/gui/moc_AboutDialog.cpp.o [ 72%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/__/include/rtabmap/gui/moc_ConsoleWidget.cpp.o [ 72%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/__/include/rtabmap/gui/moc_ImageView.cpp.o [ 73%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/__/include/rtabmap/gui/moc_PdfPlot.cpp.o [ 73%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/__/include/rtabmap/gui/moc_StatsToolBox.cpp.o [ 73%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/__/include/rtabmap/gui/moc_ProgressDialog.cpp.o [ 74%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/__/include/rtabmap/utilite/moc_UPlot.cpp.o [ 74%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/__/include/rtabmap/utilite/moc_UImageView.cpp.o [ 74%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/__/include/rtabmap/gui/moc_CloudViewer.cpp.o [ 75%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/__/include/rtabmap/gui/moc_OdometryViewer.cpp.o [ 75%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/__/include/rtabmap/gui/moc_LoopClosureViewer.cpp.o [ 75%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/__/include/rtabmap/gui/moc_DataRecorder.cpp.o [ 76%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/__/include/rtabmap/gui/moc_CameraViewer.cpp.o [ 76%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/__/include/rtabmap/gui/moc_CalibrationDialog.cpp.o [ 76%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/__/include/rtabmap/gui/moc_ExportDialog.cpp.o [ 77%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/__/include/rtabmap/gui/moc_PostProcessingDialog.cpp.o [ 77%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/__/include/rtabmap/gui/moc_ExportCloudsDialog.cpp.o [ 77%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/__/include/rtabmap/gui/moc_ExportBundlerDialog.cpp.o [ 78%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/__/include/rtabmap/gui/moc_MapVisibilityWidget.cpp.o [ 78%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/__/include/rtabmap/gui/moc_GraphViewer.cpp.o [ 78%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/__/include/rtabmap/gui/moc_CreateSimpleCalibrationDialog.cpp.o [ 79%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/__/include/rtabmap/gui/moc_ParametersToolBox.cpp.o [ 79%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/__/include/rtabmap/gui/moc_DepthCalibrationDialog.cpp.o [ 79%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/__/include/rtabmap/gui/moc_EditConstraintDialog.cpp.o [ 80%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/3rdParty/moc_QMultiComboBox.cpp.o [ 80%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/__/include/rtabmap/gui/moc_TexturingState.cpp.o [ 80%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/__/include/rtabmap/gui/moc_RecoveryState.cpp.o [ 81%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/__/include/rtabmap/gui/moc_EditDepthArea.cpp.o [ 81%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/__/include/rtabmap/gui/moc_EditMapArea.cpp.o [ 81%] Building CXX object guilib/src/CMakeFiles/rtabmap_gui.dir/qrc_GuiLib.cpp.o [ 82%] Linking CXX shared library ../../../bin/librtabmap_gui.so [ 82%] Built target rtabmap_gui Makefile:151: recipe for target 'all' failed make: *** [all] Error 2 masterdot@masterdot-linux:~/3dscan/rtabmap/build$

It comes out of nowhere... Seems to be a issue with the gui building, but I don't find a hint what might be wrong... Maybe a lib is missing, but I don't know which may be...
Thanks for your patience and help!

matlabbe · 2020-02-05T23:25:29Z

Use "make" (without -j4), so only one file is built at the same time to make easier to read the error.

masterdot · 2020-02-06T00:19:12Z

Thanks for the tip, now it's more clear what failed. Didn't know that multi compile just exist somewhere.

[ 80%] Generating moc_ObjDeletionHandler.cpp Scanning dependencies of target rtabmap [ 81%] Building CXX object app/src/CMakeFiles/rtabmap.dir/main.cpp.o [ 81%] Building CXX object app/src/CMakeFiles/rtabmap.dir/moc_ObjDeletionHandler.cpp.o [ 82%] Linking CXX executable ../../../bin/rtabmap ../../../bin/librtabmap_core.so.0.19.6: Warnung: undefinierter Verweis auf »g2o::csparse_extension::cs_chol_workspace(cs_di_sparse const*, cs_di_symbolic const*, int*, double*)« ../../../bin/librtabmap_core.so.0.19.6: Warnung: undefinierter Verweis auf »g2o::csparse_extension::writeCs2Octave(char const*, cs_di_sparse const*, bool)« ../../../bin/librtabmap_core.so.0.19.6: Warnung: undefinierter Verweis auf »g2o::csparse_extension::cs_cholsolsymb(cs_di_sparse const*, double*, cs_di_symbolic const*, double*, int*)« collect2: error: ld returned 1 exit status app/src/CMakeFiles/rtabmap.dir/build.make:504: recipe for target '../bin/rtabmap' failed make[2]: *** [../bin/rtabmap] Error 1 CMakeFiles/Makefile2:416: recipe for target 'app/src/CMakeFiles/rtabmap.dir/all' failed make[1]: *** [app/src/CMakeFiles/rtabmap.dir/all] Error 2 Makefile:151: recipe for target 'all' failed make: *** [all] Error 2

masterdot · 2020-02-06T00:57:16Z

OK, quick update: I did recompile g2o and found out that it does use the EIGEN package. The result is: YES! It did compile without errors and I've successfully build it now.
You should add the requirement of the EIGEN fro the main package and the g2o.

Hope I could help you, thanks a lot for helping. Hope I do actually use it :)

matlabbe · 2020-02-06T01:09:28Z

RTAB-Map doesn't depend on Eigen directly, it is why it is not explicitly specified (when building against PCL, the eigen headers directory is automatically included in rtabmap compilation). It looks more a g2o error to me, not sure eigen was the problem, unless g2o was using another version than the one used by PCL. Great that you managed to build it!

cheers,
Mathieu

matlabbe added a commit that referenced this issue Feb 5, 2020

Fixed compilation with OpenCV 4.2 #502 (see opencv/opencv@ad146e5 and o…

f7deefb

…pencv/opencv#16046)

matlabbe closed this as completed Feb 6, 2020

lucamozza mentioned this issue Mar 1, 2022

No such file or directory #include <cs.h> #835

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Fatal error: cs.h not found #502

Fatal error: cs.h not found #502

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Fatal error: cs.h not found #502

Fatal error: cs.h not found #502

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