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OBIS Manual Update #74

Merged
merged 90 commits into from
Jun 2, 2023
Merged

OBIS Manual Update #74

merged 90 commits into from
Jun 2, 2023

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EliLawrence
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Update contains major changes to Manual structure, content, etc. to include the developed training resources (Google doc) that cover 64 training related topics (e.g. how to format data tables, how to do QC, how to publish, constructing identifiers, where to get help, DwC term checklist, how to address common issues, etc.)

testing if site will build locally
* new data formatting intro page
* some placeholder text on page
* Added several place holder pages for new content being developed
* Moved citations from Policy to own Citations page
* Edited Contribute page
* Moved IPT info to its own page
* Attempting to change the ToC so more subheadings are shown by default
* fixed some leveling of different pages
* added /moved content related to topics #1-5 of e's topic list
* created a page for the term checklist. did not add all terms yet to test if table is being formatted correctly
* changed ordering of how to contribute/data management pages and sub pages
* added content to redundancy page
* fixed image links
* fixing images so they show up
* added content to the data_standards page for OBIS life cycle, also testing if text will wrap around the image
pull images from main branch
* added core table+identifier figure
* added content to dataset structure (cores & extensions)
* restructured examples page so dna data and special data types are separate pages. added some content here too
* attempting to fix image code so they will load!!
* added rest of rows for checklist
* altering node page
* attempting to fix image on data format page so text flows around image
* replaced old image on relational db page
* minor typo fixes
* attempting for TOC to be fully collapsed
* trying to fix level toc collapses down to
*also testing fig.cap for figure captions
* attempting to make page width wider by default so tables don't need to scroll as much
* removing the "fig_caption: true" to see if that's where it's failing to render
* still trying to fix toc collapse, moved toc_depth to pdf_book
*also attempting to add a link back to main website
* added content to qc pages and common qc issues
* minor adjustments to formatting/style elsewhere
* added content to data publishing pages, restructured some of these pages
* edited ipt page, adding more content, created new page specifically for ipt admins
* edited the EML page, adding images as well
* adding to data_sharing page and IPT admin page
* fixing some formatting errors I think are causing render to fail
* fix various formatting
* fixed some broken links
* fixed typo in an image on ipt page
* added data access content
* fixed some typos/broken links
* minor edits for clarity in a couple places, as well as removing redundancy on the darwin_core page
* added a table summarizing the DwC terms you can obtain from the maptool or the gazetteers
* moved column in DwC term table in the maptool/gazetteer ref list
* fixed minor formatting on vocab and common format issue page
* minor formatting to several pages, reorganizing of content, fixed some typos
* fixed link formatting on various pages
* increased size of images on most pages
* added FAQ page
* added a page for how to map species occurrence, but it's not in bookdown yet
* fixed some header formatting to make ToC cleaner
* fixed internal link
* changed image sizes to  make them larger
* added some individual page Table of Contents
* fixed some image captions
* Changed wording of some recommendations, e.g. required --> strongly recc for scientificNameID
* Changed wording for "certain" taxon identifications to "high/low confidence"
* Added more help links and links to relevant GitHub repos (QC, OBIS issues, datasets needing endorsing)
* Added mention of LSIDs documentation for constructing eventIDs (issue #1 )
* Emphasized contact of WoRMS team in case of non matching names
* Moved vocab guidelines to a non-public page as they are under construction (page=vocab_WIPmaterials)
* Changed text to say "available soon" for training videos until they are published and can be embedded/linked
@pieterprovoost pieterprovoost changed the base branch from master to elizabeth June 2, 2023 09:21
@pieterprovoost pieterprovoost merged commit ced21ed into iobis:elizabeth Jun 2, 2023
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2 participants