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Osteosarc 0.1.4

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@iskandr iskandr released this 22 Sep 03:18
v0.1.4
b123e2d
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Fixes #10: eight corrections stopped matching after upstream records changed.

  • The five renamed Tempus variants receive their verified literal alleles. Counts generated for placeholder alleles are cleared to unmeasured.
  • Removed GRCh37 Tempus count rows are recognized as fixed upstream. Historical snapshots still clear their incorrect counts.
  • DCHS2 keeps its verified transcript accession. The retained USH2A allele and counts are preserved, with its location label corrected and the upstream merge recorded. Original Natera identity remains unconfirmed.
  • Historical snapshots retain their IDs and corrections. Unexpected future changes still warn and fail curation --strict.

The current catalogue has 179 ready entries out of 181; the historical catalogue has 179 out of 182. See the updated source correction documentation.

Install or upgrade:

python -m pip install --upgrade osteosarc==0.1.4

Validation: 175 local tests, Python 3.10/3.12/3.13 CI, Varcode 7/9 consumer checks, strict docs build, and source/mapping verification. Both historical and fresh snapshots pass strict curation; all documented examples pass against live sources.

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