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osteosarc 0.13.0
A simpler site, and less code (#75).
- The home page is the overview. Concepts is folded into a short "How the data
fits together" there, linking to each topic's page. - Removed, now that the OpenVax libraries take their reads from openvax-v1:
- osteosarc.regional_corpus;
- the generators in legacy_fixtures (generate, pack, verify, export_fixture and
their helpers) and cohort_bundle (generate_cohort_bundle, retrieval_regions);
the functions Isovar and Vaxrank import stay; - osteosarc.bundles.generate_panel;
osteosarc test-data make --recipe, or
generate_bundle, does the same; - osteosarc.records.sam_digest, and SAM-text record identities in recipes;
- osteosarc.reads.subset_templates, a random sample that make_bundle's balanced
sets replace; - reading bundles made by osteosarc 0.2 or earlier, which now says to make them
again.
- The frozen SV test recipe moves from the package into tests/data.