computel-docker

Install docker

1. https://docs.docker.com/engine/install/ubuntu/
2. https://docs.docker.com/engine/install/linux-postinstall/#manage-docker-as-a-non-root-user

Load submodules

cd computel-docker/computel
git submodule init
git submodule update

Build the image

cd computel-docker
docker build -t computel-docker-1.2:latest .

Container run

docker run -it --rm -v $(pwd):/data computel-docker-1.2:latest computel.sh -1 <fq1> -2 <fq2> -o <output_path_dir> 

Test run

docker run -it -v $(pwd):/data computel-docker-1.2:latest computel.sh -1 computel/src/examples/tel_reads1.fq.gz -2 computel/src/examples/tel_reads2.fq.gz -o mytest -proc 4