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trying to switch to tinytex for Windows builds #40

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@jameslamb jameslamb changed the title trying to fix miktex trying to switch to tinytex for Windows builds Feb 21, 2021
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jameslamb commented Feb 21, 2021

I tried installing {tinytex}, didn't seem to work or maybe I installed it incorrectly. Despite the fact that we don't do anything custom in the manual for the R package, R CMD check fails with the following:

* checking PDF version of manual ... WARNING

LaTeX errors when creating PDF version.

This typically indicates Rd problems.

LaTeX errors found:

* checking PDF version of manual without hyperrefs or index ... OK
* checking for non-standard things in the check directory ... NOTE
Found the following files/directories:

  'lightgbm-manual.tex'

* checking for detritus in the temp directory ... OK
* DONE
Status: 1 WARNING, 1 NOTE
full pdfTex logs from manual building
This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/W32TeX) (preloaded format=pdflatex 2021.2.20)  21 FEB 2021 02:26
entering extended mode
 restricted \write18 enabled.
 %&-line parsing enabled.
**Rd2.tex
(./Rd2.tex
LaTeX2e <2020-10-01> patch level 4
L3 programming layer <2021-02-18>

(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/base/book.cl
s
Document Class: book 2020/04/10 v1.4m Standard LaTeX document class

(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/base/bk10.cl
o
File: bk10.clo 2020/04/10 v1.4m Standard LaTeX file (size option)
)
\c@part=\count179
\c@chapter=\count180
\c@section=\count181
\c@subsection=\count182
\c@subsubsection=\count183
\c@paragraph=\count184
\c@subparagraph=\count185
\c@figure=\count186
\c@table=\count187
\abovecaptionskip=\skip47
\belowcaptionskip=\skip48
\bibindent=\dimen138
) (d:/a/LightGBM/LightGBM/RLibrary/R/share/texmf/tex/latex/Rd.sty
Package: Rd 

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Package: ifthen 2014/09/29 v1.1c Standard LaTeX ifthen package (DPC)
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(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/tools/longta
ble.sty
Package: longtable 2020/01/07 v4.13 Multi-page Table package (DPC)
\LTleft=\skip49
\LTright=\skip50
\LTpre=\skip51
\LTpost=\skip52
\LTchunksize=\count188
\LTcapwidth=\dimen139
\LT@head=\box47
\LT@firsthead=\box48
\LT@foot=\box49
\LT@lastfoot=\box50
\LT@cols=\count189
\LT@rows=\count190
\c@LT@tables=\count191
\c@LT@chunks=\count192
\LT@p@ftn=\toks15
)
(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/tools/bm.sty
Package: bm 2019/07/24 v1.2d Bold Symbol Support (DPC/FMi)
\symboldoperators=\mathgroup4
\symboldletters=\mathgroup5
\symboldsymbols=\mathgroup6
LaTeX Font Info:    Redeclaring math alphabet \mathbf on input line 141.
LaTeX Info: Redefining \bm on input line 209.
)
(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/base/alltt.s
ty
Package: alltt 1997/06/16 v2.0g defines alltt environment
)
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im.sty
Package: verbatim 2020-07-07 v1.5u LaTeX2e package for verbatim enhancements
\every@verbatim=\toks16
\verbatim@line=\toks17
\verbatim@in@stream=\read2
)
(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/url/url.sty
\Urlmuskip=\muskip16
Package: url 2013/09/16  ver 3.4  Verb mode for urls, etc.
)
(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/base/textcom
p.sty
Package: textcomp 2020/02/02 v2.0n Standard LaTeX package
)
\ldescriptionwidth=\skip53

(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/inconsolata/
zi4.sty
Package: zi4 2019/05/17 v1.12

`inconsolata-zi4' v1.12, 2019/05/17 Text macros for Inconsolata (msharpe)
(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/xkeyval/xkey
val.sty
Package: xkeyval 2020/11/20 v2.8 package option processing (HA)

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eyval.tex
(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/xkeyval/xk
vutils.tex
\XKV@toks=\toks18
\XKV@tempa@toks=\toks19

(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/xkeyval/ke
yval.tex))
\XKV@depth=\count193
File: xkeyval.tex 2014/12/03 v2.7a key=value parser (HA)
))
\zifour@ocount=\count194
)
(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/graphics/col
or.sty
Package: color 2020/02/24 v1.2b Standard LaTeX Color (DPC)

(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/graphics-cfg
/color.cfg
File: color.cfg 2016/01/02 v1.6 sample color configuration
)
Package color Info: Driver file: pdftex.def on input line 147.

(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/graphics-def
/pdftex.def
File: pdftex.def 2020/10/05 v1.2a Graphics/color driver for pdftex
))
(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/hyperref/hyp
erref.sty
Package: hyperref 2021-02-10 v7.00j Hypertext links for LaTeX

(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/ltxcmds/lt
xcmds.sty
Package: ltxcmds 2020-05-10 v1.25 LaTeX kernel commands for general use (HO)
)
(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/iftex/ifte
x.sty
Package: iftex 2020/03/06 v1.0d TeX engine tests
)
(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/pdftexcmds
/pdftexcmds.sty
Package: pdftexcmds 2020-06-27 v0.33 Utility functions of pdfTeX for LuaTeX (HO
)

(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/infwarerr/
infwarerr.sty
Package: infwarerr 2019/12/03 v1.5 Providing info/warning/error messages (HO)
)
Package pdftexcmds Info: \pdf@primitive is available.
Package pdftexcmds Info: \pdf@ifprimitive is available.
Package pdftexcmds Info: \pdfdraftmode found.
)
(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/kvsetkeys/
kvsetkeys.sty
Package: kvsetkeys 2019/12/15 v1.18 Key value parser (HO)
)
(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/kvdefineke
ys/kvdefinekeys.sty
Package: kvdefinekeys 2019-12-19 v1.6 Define keys (HO)
)
(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/pdfescape/
pdfescape.sty
Package: pdfescape 2019/12/09 v1.15 Implements pdfTeX's escape features (HO)
)
(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/hycolor/hyco
lor.sty
Package: hycolor 2020-01-27 v1.10 Color options for hyperref/bookmark (HO)
)
(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/letltxmacro/
letltxmacro.sty
Package: letltxmacro 2019/12/03 v1.6 Let assignment for LaTeX macros (HO)
)
(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/auxhook/auxh
ook.sty
Package: auxhook 2019-12-17 v1.6 Hooks for auxiliary files (HO)
)
(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/kvoptions/kv
options.sty
Package: kvoptions 2020-10-07 v3.14 Key value format for package options (HO)
)
\@linkdim=\dimen140
\Hy@linkcounter=\count195
\Hy@pagecounter=\count196

(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/hyperref/pd1
enc.def
File: pd1enc.def 2021-02-10 v7.00j Hyperref: PDFDocEncoding definition (HO)
Now handling font encoding PD1 ...
... no UTF-8 mapping file for font encoding PD1
)
(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/hyperref/hyp
erref-langpatches.def
File: hyperref-langpatches.def 2021-02-10 v7.00j Hyperref: patches for babel la
nguages
)
(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/intcalc/in
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Package: intcalc 2019/12/15 v1.3 Expandable calculations with integers (HO)
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\Hy@SavedSpaceFactor=\count197

(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/hyperref/pue
nc.def
File: puenc.def 2021-02-10 v7.00j Hyperref: PDF Unicode definition (HO)
Now handling font encoding PU ...
... no UTF-8 mapping file for font encoding PU
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Package hyperref Info: Hyper figures OFF on input line 4192.
Package hyperref Info: Link nesting OFF on input line 4197.
Package hyperref Info: Hyper index ON on input line 4200.
Package hyperref Info: Plain pages OFF on input line 4207.
Package hyperref Info: Backreferencing OFF on input line 4212.
Package hyperref Info: Implicit mode ON; LaTeX internals redefined.
Package hyperref Info: Bookmarks ON on input line 4445.
\c@Hy@tempcnt=\count198
LaTeX Info: Redefining \url on input line 4804.
\XeTeXLinkMargin=\dimen141

(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/bitset/bit
set.sty
Package: bitset 2019/12/09 v1.3 Handle bit-vector datatype (HO)

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Package: bigintcalc 2019/12/15 v1.5 Expandable calculations on big integers (HO
)
))
\Fld@menulength=\count199
\Field@Width=\dimen142
\Fld@charsize=\dimen143
Package hyperref Info: Hyper figures OFF on input line 6075.
Package hyperref Info: Link nesting OFF on input line 6080.
Package hyperref Info: Hyper index ON on input line 6083.
Package hyperref Info: backreferencing OFF on input line 6090.
Package hyperref Info: Link coloring OFF on input line 6095.
Package hyperref Info: Link coloring with OCG OFF on input line 6100.
Package hyperref Info: PDF/A mode OFF on input line 6105.
LaTeX Info: Redefining \ref on input line 6145.
LaTeX Info: Redefining \pageref on input line 6149.

(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/base/atbegsh
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Package: atbegshi-ltx 2020/08/17 v1.0a Emulation of the original atbegshi packa
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with kernel methods
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\Hy@abspage=\count266
\c@Item=\count267
\c@Hfootnote=\count268
)
Package hyperref Info: Driver (autodetected): hpdftex.

(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/hyperref/hpd
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File: hpdftex.def 2021-02-10 v7.00j Hyperref driver for pdfTeX

(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/base/atverye
nd-ltx.sty
Package: atveryend-ltx 2020/08/19 v1.0a Emulation of the original atvery packag
e
with kernel methods
)
\Fld@listcount=\count269
\c@bookmark@seq@number=\count270

(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/rerunfileche
ck/rerunfilecheck.sty
Package: rerunfilecheck 2019/12/05 v1.9 Rerun checks for auxiliary files (HO)

(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/uniquecoun
ter/uniquecounter.sty
Package: uniquecounter 2019/12/15 v1.4 Provide unlimited unique counter (HO)
)
Package uniquecounter Info: New unique counter `rerunfilecheck' on input line 2
86.
)
\Hy@SectionHShift=\skip54
)

Package hyperref Warning: Option `hyperindex' has already been used,
(hyperref)                setting the option has no effect on input line 377.

Package hyperref Info: Option `colorlinks' set `true' on input line 377.

Package hyperref Warning: Option `pagebackref' has already been used,
(hyperref)                setting the option has no effect on input line 377.

Package hyperref Info: Option `linktocpage' set `true' on input line 377.
Package hyperref Info: Option `plainpages' set `false' on input line 377.
)
(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/base/makeidx
.sty
Package: makeidx 2014/09/29 v1.0m Standard LaTeX package
)
(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/base/inputen
c.sty
Package: inputenc 2020/08/01 v1.3d Input encoding file
\inpenc@prehook=\toks20
\inpenc@posthook=\toks21
)
\@indexfile=\write3
\openout3 = `Rd2.idx'.


Writing index file Rd2.idx

(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/l3backend/l3
backend-pdftex.def
File: l3backend-pdftex.def 2021-02-18 L3 backend support: PDF output (pdfTeX)
\l__color_backend_stack_int=\count271
\l__pdf_internal_box=\box51
) (./Rd2.aux)
\openout1 = `Rd2.aux'.

LaTeX Font Info:    Checking defaults for OML/cmm/m/it on input line 8.
LaTeX Font Info:    ... okay on input line 8.
LaTeX Font Info:    Checking defaults for OMS/cmsy/m/n on input line 8.
LaTeX Font Info:    ... okay on input line 8.
LaTeX Font Info:    Checking defaults for OT1/cmr/m/n on input line 8.
LaTeX Font Info:    ... okay on input line 8.
LaTeX Font Info:    Checking defaults for T1/cmr/m/n on input line 8.
LaTeX Font Info:    ... okay on input line 8.
LaTeX Font Info:    Checking defaults for TS1/cmr/m/n on input line 8.
LaTeX Font Info:    ... okay on input line 8.
LaTeX Font Info:    Checking defaults for OMX/cmex/m/n on input line 8.
LaTeX Font Info:    ... okay on input line 8.
LaTeX Font Info:    Checking defaults for U/cmr/m/n on input line 8.
LaTeX Font Info:    ... okay on input line 8.
LaTeX Font Info:    Checking defaults for PD1/pdf/m/n on input line 8.
LaTeX Font Info:    ... okay on input line 8.
LaTeX Font Info:    Checking defaults for PU/pdf/m/n on input line 8.
LaTeX Font Info:    ... okay on input line 8.
Package hyperref Info: Link coloring ON on input line 8.

(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/hyperref/nam
eref.sty
Package: nameref 2021-04-02 v2.47 Cross-referencing by name of section

(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/refcount/ref
count.sty
Package: refcount 2019/12/15 v3.6 Data extraction from label references (HO)
)
(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/generic/gettitlest
ring/gettitlestring.sty
Package: gettitlestring 2019/12/15 v1.6 Cleanup title references (HO)
)
\c@section@level=\count272
)
LaTeX Info: Redefining \ref on input line 8.
LaTeX Info: Redefining \pageref on input line 8.
LaTeX Info: Redefining \nameref on input line 8.
 (./Rd2.out) (./Rd2.out)
\@outlinefile=\write4
\openout4 = `Rd2.out'.

LaTeX Font Info:    Trying to load font information for OT1+zi4 on input line 3
4.

(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/inconsolata/
ot1zi4.fd
File: ot1zi4.fd 2018/01/14 OT1/zi4 (Inconsolata)
)
LaTeX Font Info:    Font shape `OT1/zi4/m/n' will be
(Font)              scaled to size 10.0pt on input line 34.
LaTeX Font Info:    External font `cmex10' loaded for size
(Font)              <7> on input line 34.
LaTeX Font Info:    External font `cmex10' loaded for size
(Font)              <5> on input line 34.
 [1


{c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-var/fonts/map/pdftex/updmap
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LaTeX Font Info:    Trying to load font information for OML+zi4 on input line 6
4.
LaTeX Font Info:    No file OMLzi4.fd. on input line 64.


LaTeX Font Warning: Font shape `OML/zi4/m/n' undefined
(Font)              using `OML/cmm/m/it' instead
(Font)              for symbol `textless' on input line 64.

(./Rd2.toc [2])
\tf@toc=\write5
\openout5 = `Rd2.toc'.


Overfull \hbox (35.04916pt too wide) in paragraph at lines 100--103
[]\OT1/cmr/m/n/10 Bache, K. & Lich-man, M. (2013). UCI Ma-chine Learn-ing Repos
-i-tory [http://archive.ics.uci.edu/ml].
 []


Overfull \hbox (35.04916pt too wide) in paragraph at lines 136--139
[]\OT1/cmr/m/n/10 Bache, K. & Lich-man, M. (2013). UCI Ma-chine Learn-ing Repos
-i-tory [http://archive.ics.uci.edu/ml].
 []

[3]
LaTeX Font Info:    Trying to load font information for TS1+zi4 on input line 1
77.

(c:/Users/runneradmin/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/inconsolata/
ts1zi4.fd
File: ts1zi4.fd 2018/01/14 TS1/zi4 (Inconsolata)
)
LaTeX Font Info:    Font shape `TS1/zi4/m/n' will be
(Font)              scaled to size 10.0pt on input line 177.
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LaTeX Font Info:    Font shape `OT1/zi4/m/n' will be
(Font)              scaled to size 9.0pt on input line 200.
 [5] [6] [7] [8] [9]
Overfull \hbox (3.25894pt too wide) in paragraph at lines 528--532
\OT1/cmr/m/n/10 train-ing data. Re-turns the model with (best[]iter + early[]st
opping[]rounds).
 []

[10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24]
[25]
Overfull \hbox (3.25894pt too wide) in paragraph at lines 1518--1522
\OT1/cmr/m/n/10 train-ing data. Re-turns the model with (best[]iter + early[]st
opping[]rounds).
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[26]
Overfull \hbox (19.77351pt too wide) in paragraph at lines 1613--1615
[]\OT1/cmr/m/n/10 The en-vi-ron-ment to per-form wip-ing on if \OT1/zi4/m/n/10 
wipe == TRUE\OT1/cmr/m/n/10 . De-faults to \OT1/zi4/m/n/10 .GlobalEnv
 []

[27] [28]
Overfull \hbox (3.25894pt too wide) in paragraph at lines 1695--1699
\OT1/cmr/m/n/10 train-ing data. Re-turns the model with (best[]iter + early[]st
opping[]rounds).
 []


Overfull \hbox (42.40564pt too wide) in paragraph at lines 1714--1715
[]\OT1/zi4/m/n/10 record\OT1/cmr/m/n/10 : Boolean, TRUE will record it-er-a-tio
n mes-sage to \OT1/zi4/m/n/10 booster\TS1/zi4/m/n/10 $\OT1/zi4/m/n/10 record[]e
vals 
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[29] [30] [31] [32] [33] [34]
No file Rd2.ind.
[35] (./Rd2.aux)

LaTeX Font Warning: Some font shapes were not available, defaults substituted.

Package rerunfilecheck Info: File `Rd2.out' has not changed.
(rerunfilecheck)             Checksum: 063852679A42FB75B48B06D64C2AAA4B;3994.
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Here is how much of TeX's memory you used:
 8309 strings out of 480971
 125455 string characters out of 5905996
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 25143 multiletter control sequences out of 15000+600000
 410645 words of font info for 51 fonts, out of 8000000 for 9000
 14 hyphenation exceptions out of 8191
 88i,6n,90p,377b,617s stack positions out of 5000i,500n,10000p,200000b,80000s
pdfTeX warning (dest): name{Rfn.readRDS} has been referenced but does not exi
st, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.barplot} has been referenced but does not exist
, replaced by a fixed one

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Output written on Rd2.pdf (35 pages, 203776 bytes).
PDF statistics:
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 266 named destinations out of 1000 (max. 500000)
 249 words of extra memory for PDF output out of 10000 (max. 10000000)

@jameslamb jameslamb closed this Apr 19, 2021
@jameslamb jameslamb deleted the ci/miktex branch April 19, 2021 01:26
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