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if your filesystem server uses the default npx -y @modelcontextprotocol/server-filesystem launcher then the package launcher can need the registry even though the server itself only reads local files default config preinstall a fixed version of that server and its dependencies in your approved environment then configure Jan to run its local entry point with an absolute path to node instead of npx that removes package resolution from each startup if your command is already a local executable the startup error would help identify a different cause

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@wh33t
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