Error during installation

[josesho]

> devtools::install_github(c("jefferislab/flywatch"))
Downloading github repo jefferislab/flywatch@master
Installing flywatch
'/Library/Frameworks/R.framework/Resources/bin/R' --no-site-file --no-environ --no-save --no-restore CMD INSTALL  \
  '/private/var/folders/c1/1739134j5xzftpgg3j7h74h80000gw/T/Rtmp4VNZh1/devtools58a533cc7c2/jefferislab-flywatch-1d1f332'  \
  --library='/Library/Frameworks/R.framework/Versions/3.2/Resources/library' --install-tests 

During startup - Warning messages:
1: Setting LC_CTYPE failed, using "C" 
2: Setting LC_TIME failed, using "C" 
3: Setting LC_MESSAGES failed, using "C" 
4: Setting LC_MONETARY failed, using "C" 
* installing *source* package 'flywatch' ...
** R
** inst
** preparing package for lazy loading
Warning: package 'ggplot2' was built under R version 3.2.3
[1] "These are the genotypes to be analysed. Please check for naming errors:"
[1] "ST"
Warning in readTIFF(source = files[j], all = TRUE, as.is = FALSE) :
  TIFFReadDirectory: Unknown field with tag 50838 (0xc696) encountered
Warning in readTIFF(source = files[j], all = TRUE, as.is = FALSE) :
  TIFFReadDirectory: Unknown field with tag 50839 (0xc697) encountered
Error in FUN(X[[i]], ...) : 
  'x' must be an array of at least two dimensions
Error : unable to load R code in package 'flywatch'
ERROR: lazy loading failed for package 'flywatch'
* removing '/Library/Frameworks/R.framework/Versions/3.2/Resources/library/flywatch'
Error: Command failed (1)

[jefferis]

Many thanks @josesho. Could you post your sessionInfo() as well? Best, Greg

[josesho]

my sessionInfo() --

R version 3.2.2 (2015-08-14)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X 10.11.2 (El Capitan)

locale:
[1] C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
[1] tools_3.2.2

[jefferis]

Thanks @josesho – it should be fixed now though. I was surprised by the error but it was simply because one of my colleagues who is less experienced with package development had added some new code that worked in other contexts but not yet in this one.

[josesho]

Hi Greg,

No worries — thank you for the prompt response!

Joses

On 28 December 2015 at 20:23, Gregory Jefferis notifications@github.com
wrote:

Thanks @josesho https://github.com/josesho – it should be fixed now
though. I was surprised by the error but it was simply because one of my
colleagues who is less experienced with package development had added some
new that worked in other contexts but not yet in this one.

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