This repository shows how to package a Snakemake workflow into a command line
interface using snk-cli. The
pyproject.toml file is a configuration file for packaging python tools. It is
supplemented with a tool-specific entries for pixi, making it possible to
install both the workflow and its dependencies with Pixi.
- Install Pixi
- Start up a Pixi shell
pixi shellThe mrsa-workflow, as well as all its dependencies should now be installed.
To see available parameters run:
mrsa-workflow run -hRun with default parameters:
mrsa-workflow runmrsa-workflow is distributed under the terms of the MIT license.