nf-modules_v0.2.1

[0.2.1] - 2025-12-05

• Added identifier_mapping.proteins.tsv.gz to each test organism
• Added pykofamsearch_results.tsv.gz to each test organism
• Added kegg_pathway_profiler module
• Reverted version from gtdbtk_classifywf from 2.5.2 to 2.4.1 because of significant performance issues with recomputing sketches see GTDB-Tk issue #665

[0.2.0] - 2025-12-02

• Added test data:

  • Bacteria:

    • Species: Escherichia coli str. K-12 substr. MG1655
    • RefSeq: GCF_000005845.2
    • Files: data/organisms/bacteria/e_coli.*.gz

  • Archaea:

    • Species: Haloferax volcanii DS2
    • RefSeq: GCF_000025685.1
    • Files: data/organisms/archaea/h_volcanii.*.gz

  • Eukarya:

    • Species: Saccharomyces cerevisiae S288C
    • RefSeq: GCF_000146045.2
    • Files: data/organisms/eukarya/yeast.*.gz

  • Virus:

    • Species: Escherichia phage T7
    • RefSeq: GCF_000844825.1
    • Files: data/organisms/virus/phage.*.gz
• Changed ${meta.id}.scaffolds.fasta.gz to ${meta.id}.assembly.fa.gz to be consistent with extension used by FLYE
• Changed ${meta.id}.assembly.fasta.gz to ${meta.id}.assembly.fa.gz to be consistent with extension used by SPAdes
• Updated PyHMMSearch to v2025.10.23.post1 which includes description field of HMMs
• Added gtdbtk_classifywf module
• Changed default location from modules/external/ to modules/local/nf-modules/ because nf-core throws error