Name		Name	Last commit message	Last commit date
Latest commit History 29 Commits
AutoRun		AutoRun
toolsets		toolsets
.directory		.directory
0922tmpA.ijm		0922tmpA.ijm
0922tmpB.ijm		0922tmpB.ijm
0922tmpC.ijm		0922tmpC.ijm
2DSpotFinder.ijm		2DSpotFinder.ijm
AAI_SimpleBrduQuantification.ijm		AAI_SimpleBrduQuantification.ijm
AAI_SpotFinderv3.ijm		AAI_SpotFinderv3.ijm
AAI_SpotFinderv4.ijm		AAI_SpotFinderv4.ijm
AHK_BatchStitcher.ijm		AHK_BatchStitcher.ijm
AHK_PrepareForStitch.ijm		AHK_PrepareForStitch.ijm
AHK_ProcessStellaWells.ijm		AHK_ProcessStellaWells.ijm
AHK_ProcessStellaWellsv2.ijm		AHK_ProcessStellaWellsv2.ijm
AHK_QuantifyStellaEmbryoIntensity.ijm		AHK_QuantifyStellaEmbryoIntensity.ijm
AHK_QuantifyStellaEmbryoIntensityv2.ijm		AHK_QuantifyStellaEmbryoIntensityv2.ijm
AIK_SpecificRectangle.ijm		AIK_SpecificRectangle.ijm
AIK_SpotFinder.ijm		AIK_SpotFinder.ijm
ANZ_FlattenAndStitch.ijm		ANZ_FlattenAndStitch.ijm
ANZ_ShowRatioSMEDPiwi.ijm		ANZ_ShowRatioSMEDPiwi.ijm
ANZ_SpotFinderv4.ijm		ANZ_SpotFinderv4.ijm
ANZ_SpotFinderv5.ijm		ANZ_SpotFinderv5.ijm
ANZ_SpotFinderv6.ijm		ANZ_SpotFinderv6.ijm
ANZ_SubtractBackground.ijm		ANZ_SubtractBackground.ijm
AOG_FishTailPeakFinder.ijm		AOG_FishTailPeakFinder.ijm
AOG_SpotFinder.ijm		AOG_SpotFinder.ijm
AOG_Window_Large_Image.ijm		AOG_Window_Large_Image.ijm
AdjustBrightnessContrast.ijm		AdjustBrightnessContrast.ijm
AlignMultiDimFromFile.ijm		AlignMultiDimFromFile.ijm
AlignRotateStellaHead.ijm		AlignRotateStellaHead.ijm
AlignSPIM.ijm		AlignSPIM.ijm
AlignSPIMA.ijm		AlignSPIMA.ijm
AlignSPIMB		AlignSPIMB
AlignSPIMB.ijm		AlignSPIMB.ijm
AlignZ_C_T - Copy.ijm		AlignZ_C_T - Copy.ijm
AlignZ_C_T.ijm		AlignZ_C_T.ijm
Align_3D_Worms.ijm		Align_3D_Worms.ijm
Align_Sift_Multichannel.py		Align_Sift_Multichannel.py
Align_Structures.ijm		Align_Structures.ijm
Align_YUN_Samples.ijm		Align_YUN_Samples.ijm
Alignbad SPIM.ijm		Alignbad SPIM.ijm
AwesomeMacro.ijm		AwesomeMacro.ijm
AwesomeMacro_Stacks.ijm		AwesomeMacro_Stacks.ijm
AwesomeMacrov2.ijm		AwesomeMacrov2.ijm
BBP_StitchLargeWormUltraview.ijm		BBP_StitchLargeWormUltraview.ijm
BP.ijm		BP.ijm
BRS_ZainabSpots.ijm		BRS_ZainabSpots.ijm
BadBatchProcessFlies.ijm		BadBatchProcessFlies.ijm
BadProcessWormPluginv2.ijm		BadProcessWormPluginv2.ijm
Batch Normalize Spectra.ijm		Batch Normalize Spectra.ijm
Batch Planaria Fluorescence Segment_dep.ijm		Batch Planaria Fluorescence Segment_dep.ijm
Batch Planaria Stitch Segment Process_dep.ijm		Batch Planaria Stitch Segment Process_dep.ijm
BatchAlign.ijm		BatchAlign.ijm
BatchAnnotate.ijm		BatchAnnotate.ijm
BatchBackgroundSubtract.ijm		BatchBackgroundSubtract.ijm
BatchBackgroundSubtract_NoSubfolders.ijm		BatchBackgroundSubtract_NoSubfolders.ijm
BatchBatchBatcher.ijm		BatchBatchBatcher.ijm
BatchBatcher.ijm		BatchBatcher.ijm
BatchColocalize.ijm		BatchColocalize.ijm
BatchCombineColoc.ijm		BatchCombineColoc.ijm
BatchCombineSim2.ijm		BatchCombineSim2.ijm
BatchConvertnd2.ijm		BatchConvertnd2.ijm
BatchConvertnd2v2.ijm		BatchConvertnd2v2.ijm
BatchConvertnd2v3.ijm		BatchConvertnd2v3.ijm
BatchCountChromosomes.ijm		BatchCountChromosomes.ijm
BatchCountChromosomes_YUW.ijm		BatchCountChromosomes_YUW.ijm
BatchExportLIF.ijm		BatchExportLIF.ijm
BatchExportVSISeries.ijm		BatchExportVSISeries.ijm
BatchExportVSIsInFolders.ijm		BatchExportVSIsInFolders.ijm
BatchExportVSIsInOrder.ijm		BatchExportVSIsInOrder.ijm
BatchFRAP.ijm		BatchFRAP.ijm
BatchFixProjectStitchMultiChannelSpinningDiskData.ijm		BatchFixProjectStitchMultiChannelSpinningDiskData.ijm
BatchJackMacro.ijm		BatchJackMacro.ijm
BatchMacro.ijm		BatchMacro.ijm
BatchMakeSimpleMask.ijm		BatchMakeSimpleMask.ijm
BatchMultiChannelStitch.ijm		BatchMultiChannelStitch.ijm
BatchProcessFRET.ijm		BatchProcessFRET.ijm
BatchProcessFlies		BatchProcessFlies
BatchProcessFlies.ijm		BatchProcessFlies.ijm
BatchProcessFlies_OldData.ijm		BatchProcessFlies_OldData.ijm
BatchProcessFlies_OldData_Experimental.ijm		BatchProcessFlies_OldData_Experimental.ijm
BatchProcessFlies_OldData_Experimental_avi.ijm		BatchProcessFlies_OldData_Experimental_avi.ijm
BatchProcessFlies_OldData_avi.ijm		BatchProcessFlies_OldData_avi.ijm
BatchProcessFliesv2.ijm		BatchProcessFliesv2.ijm
BatchProcessFliesv3.ijm		BatchProcessFliesv3.ijm
BatchProjectVolocity.ijm		BatchProjectVolocity.ijm
BatchStackToHyperStackSAE.ijm		BatchStackToHyperStackSAE.ijm
BatchStitchMultiChannelSpinningDiskData.ijm		BatchStitchMultiChannelSpinningDiskData.ijm
BatchStitchMultiChannelSpinningDiskData_Hanh3x1.ijm		BatchStitchMultiChannelSpinningDiskData_Hanh3x1.ijm
BatchStitchMultiChannelSpinningDiskData_LiChun.ijm		BatchStitchMultiChannelSpinningDiskData_LiChun.ijm
BatchStitchMultiChannelSpinningDiskData_LiMei.ijm		BatchStitchMultiChannelSpinningDiskData_LiMei.ijm
BatchStitchMultiChannelSpinningDiskData_wReference.ijm		BatchStitchMultiChannelSpinningDiskData_wReference.ijm
BatchStitchPlanaria.ijm		BatchStitchPlanaria.ijm
BatchUnetRaws.ijm		BatchUnetRaws.ijm
BatchWormProcess.ijm		BatchWormProcess.ijm
Batch_Align_3D_Worms.ijm		Batch_Align_3D_Worms.ijm
Batch_AwesomeMacro_Stacks.ijm		Batch_AwesomeMacro_Stacks.ijm
Batch_BBP_Stitch.ijm		Batch_BBP_Stitch.ijm
Batch_CPA_LengthMeasurement.ijm		Batch_CPA_LengthMeasurement.ijm
Batch_CPA_LengthMeasurement_Standalone.ijm		Batch_CPA_LengthMeasurement_Standalone.ijm

Repository files navigation

smc-macros

Complete suite of ImageJ/Fiji macros written by Sean McKinney for performing various image processing tasks at the Stowers Institute. Most of these macros require Fiji, and many require the "Stowers" plugin package to be installed.

In order to install the "Stowers" plugin package in Fiji: Help->Update->Manage update sites and select "Stowers".

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Repository files navigation

smc-macros

About

Releases

Packages

Languages

jouyun/smc-macros

Folders and files

Latest commit

History

Repository files navigation

smc-macros

About

Resources

Stars

Watchers

Forks

Releases

Packages 0

Languages

Packages