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v1.2.0

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@txje txje released this 14 Oct 23:27

What's Changed

  • Fix JumpDb::get when the window starts before the first junction by @txje in #20
  • api: expose JumpDb loading (-j) for jump-splice extension by @shamoni in #17
  • align/jump: extend md_str, divergence, and edit_distance alongside cigar_str in jump_split_left/right by @shamoni in #18
  • api: fix Mapping.is_supplementary to reflect the real SAM FLAG by @shamoni in #15
  • api: add Mapping.sa_tag, the real SA:Z tag value by @shamoni in #16
  • api: add Mapping.full_cigar, the CIGAR with clips and the matching SEQ/QUAL range by @shamoni in #19

Breaking API changes

  • Mapping.is_supplementary now means SAM 0x800; the old meaning (z-drop split) is Mapping.is_zdrop_rescued
  • Mapping and FullCigar are #[non_exhaustive]
  • align::jump::jump_split takes an &OutputConfig

New Contributors

Full Changelog: v1.1.3...v1.2.0