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What's Changed
- Fix JumpDb::get when the window starts before the first junction by @txje in #20
- api: expose JumpDb loading (
-j) for jump-splice extension by @shamoni in #17 - align/jump: extend md_str, divergence, and edit_distance alongside cigar_str in jump_split_left/right by @shamoni in #18
- api: fix
Mapping.is_supplementaryto reflect the real SAM FLAG by @shamoni in #15 - api: add Mapping.sa_tag, the real SA:Z tag value by @shamoni in #16
- api: add Mapping.full_cigar, the CIGAR with clips and the matching SEQ/QUAL range by @shamoni in #19
Breaking API changes
- Mapping.is_supplementary now means SAM 0x800; the old meaning (z-drop split) is Mapping.is_zdrop_rescued
- Mapping and FullCigar are #[non_exhaustive]
- align::jump::jump_split takes an &OutputConfig
New Contributors
Full Changelog: v1.1.3...v1.2.0