MathOnco

Some scripts for mathematical oncology

###Relevant blog posts

Evolutionary dynamics of cancer: modeling the dynamics of prostate cancer that has metastasized to the bone. See script basicBoneModel.nb

Related to the double goods game (public and club good):

1. Bernstein polynomials and non-linear public goods in tumours
2. Double public goods games and acid-mediated tumor invasion
3. Pairwise games as a special case of public goods
4. From linear to nonlinear payoffs in the double public goods game
5. Don’t treat the player, treat the game: buffer therapy and bevacizumab
6. [Cancer metabolism and voluntary public goods games] (https://egtheory.wordpress.com/2016/04/14/cancer-metabolism-and-voluntary-public-goods-games/) by Robert Vander Velde
7. Acidity and vascularization as linear goods in cancer
8. Multiple realizability of replicator dynamics
9. Hamiltonian systems and closed orbits in replicator dynamics of cancer

Related to the games from time-lapse microscopy project:

1. Choosing units of size for populations of cells: justifying fluorescent area as a reasonable metric for size of cell populations.
2. Counting cancer cells with computer vision for time-lapse microscopy: basic computer vision (including how to get OpenCV up and running) and the first commit of FluorescentArea.py.
3. Population dynamics from time-lapse microscopy: scraping the archive directories from time-lapse microscopy to make plots of dynamics and estimate growth rates. First commit of ScrapeTLM.py