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1. OrthoReD OrthoReD Public

   OrthoReD: A rapid and accurate orthology prediction tool with low computational requirement

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2. OrthoReD_vNFC OrthoReD_vNFC Public

   A version of OrthoReD customized specifically for the Nitrogen-fixing Clade (NFC). Use the standard version unless this version is needed specifically.

   Perl

3. TPMs2CLUSTERGO TPMs2CLUSTERGO Public

   Pipeline to process a set of TPMs/ReadCounts to run PCA, differential expression, clustering, and GO enrichment.

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4. universc universc Public

   Forked from minoda-lab/universc

   UniverSC: a flexible cross-platform single-cell data processing pipeline

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5. MATCHMAKER MATCHMAKER Public

   Given a motif sequence(s) and a reference dataset, runs an HMM search iteratively until the search converges.

   Perl