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@daler daler released this 29 Mar 14:25
· 93 commits to master since this release
v1.12
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Learn about vigilant mode.

  • Fixed render_r1_r2 function(s) in Snakefiles (#413) which cleans up some Snakefile functions

  • add Plodia interpunctella reference config (#417) which adds some postprocessing functionality for dealing with references in zip files, and adds references for Plodia interpunctella

  • Make strand_arg a param (#415) which moves strandedness arguments to params: directive, letting jobs re-run if strandedness changed in config. Previously, rules needed to be manually re-run after changing strandedness in config.

  • Update plotting.R (#423) to fix a typo in the (infrequently-used) lcdbwf::vargenes_heatmap() function

  • Change SRA fastq directory (#418) which improves how SRA-configured runs are handled, addressing #408

  • Use tempdir, if configured, for STAR (#425) which allows STAR to use a temp dir if configured

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