Skip to content
DRLSE level set segmentation
Branch: master
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
cell_seq basic info Jan 20, 2017
README.md Rename README.txt to README.md Oct 24, 2017
dlrse.py basic info Jan 20, 2017

README.md

Requirements

  • Python 2.7
  • Scikit Image 0.11.x (for CHT and basic image processing (gaussian filter))
  • Matplotlib (for I/O)
  • Numpy (for numerical applications)
  • Pillow (Python Imaging Library) (for saving)

Development Environment

For my own use, I developed/tested on Windows, with the latest Anaconda Python distribution as of Dec 2, 2015. For some reason, there an issue with their version of matplotlib and I ran "conda update matplotlib" to update to the latest matplotlib and the error was resolved.

How to Run

To run the example code, change into the directory of interest and run the dlrse.py script.

For example $ cd cell_seq $ python ../dlrse.py will process all the cell images in the cell_seq directory. There should be both a real-time display of the processing and output images saved to the /out/ folder.

You can’t perform that action at this time.