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Visualization Tool for Protein Validation in Chimera Platform

Snapshot

Install Biopython in Chimera

  • Download biopython
  • python setup.py install --home=/Applications/Chimera.app/Contents/Frameworks/Python.framework/Versions/2.7/
  • Enter /Applications/Chimera.app/Contents/Frameworks/Python.framework/Versions/2.7/lib, "mv ./python/* ./python2.7", "rm -r ./python"
  • Restart Chimera, open IDLE, type "import Bio"

Install Tool in Chimera

  • python install.py /Applications/Chimera.app

Implementation

  • Load protein in Chimera
  • “Tools -> Utilities -> ECSU Label”, Open the validation tool
  • Choose a chain in the drop-down menu
  • Enter a threshold value
  • Click "Check" button

Reference

  • Modeling, Simulation and Visualization Student Capstone Conference 2019

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