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Network Inference in Unpartitioned Datasets #27

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lutteropp opened this issue Dec 6, 2020 · 1 comment
Open

Network Inference in Unpartitioned Datasets #27

lutteropp opened this issue Dec 6, 2020 · 1 comment

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@lutteropp
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lutteropp commented Dec 6, 2020

How does the number of partitions influence the number of inferred reticulations?

It is obvious that with LikelihoodType.BEST, network inference on an unpartitioned MSA will always lead to a tree.

However, it would be interesting to see how well NetRAX can recover reticulations in an unpartitioned MSA with LikelihoodType.AVERAGE... For this, I suggest an additional experiment where NetRAX is once run with and once without the partitions file.

@stamatak
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stamatak commented Dec 6, 2020 via email

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