Python Papers

• A Peephole Optimizer for Python
• Compiling Little Languages in Python
• Securing Your Collaborative Jupyter Notebooks in the Cloud using Container and Load Balancing Services
• Quasi-orthonormal Encoding for Machine Learning Applications
• MatLab vs. Python vs. R
• modernizing PHCpack through phcpy
• Bloscpack: a compressed lightweight serialization format for numerical data
• CATOS: Computer Aided Training/Observing System
• High-Content Digital Microscopy with Python
• PySTEMM: Executable Concept Modeling for K-12 STEM Learning
• Performance of Python runtimes on a non-numeric scientific code
• Computing an Optimal Control Policy for an Energy Storage
• JyNI – Using native CPython-Extensions in Jython
• SfePy - Write Your Own FE Application
• Mining online social networks with Python to study urban mobility
• PyFAI: a Python library for high performance azimuthal integration on GPU
• Wyrm, A Pythonic Toolbox for Brain-Computer Interfacing
• SPySort: Neuronal Spike Sorting with Python
• Using Python to Dive into Signalling Data with CellNOpt and BioServices
• Py3DFreeHandUS: a library for voxel-array reconstruction using Ultrasonography and attitude sensors
• SClib, a hack for straightforward embedded C functions in Python
• Predictive Modelling of Toxicity Resulting from Radiotherapy Treatments of Head and Neck Cancer
• pyFRET: A Python Library for Single Molecule Fluorescence Data Analysis
• Enhancing SfePy with Isogeometric Analysis
• A Python-based Post-processing Toolset For Seismic Analyses
• Numerical simulation of liver perfusion: from CT scans to FE model
• Temperature diagnostics of the solar atmosphere using SunPy
• Python vs. R: A Text Mining Approach for analyzing the Research Trends in Scopus Database
• Partial Pole Placement via Delay Action: A Python Software for Delayed Feedback Stabilizing Design
• Meta-analysis parameters computation: a Python approach to facilitate the crossing of experimental conditions
• ExoTiC-ISM: A Python package for marginalised exoplanet transit parameters across a grid of systematic instrument models
• MKLpy: a python-based framework for Multiple Kernel Learning
• ARC 3.0: An expanded Python toolbox for atomic physics calculations
• PyR@TE 3
• PyXtal FF: a Python Library for Automated Force Field Generation
• multivar horner: a python package for computing Horner factorisations of multivariate polynomials
• DyPy: A Python Library for Simulating Matrix-Form Games
• Automated Unit Test Generation for Python
• PyKEEN 1.0: A Python Library for Training and Evaluating Knowledge Graph Embeddings
• Biomedical and Clinical English Model Packages in the Stanza Python NLP Library
• Towards a Sustainable Microgrid on Alderney Island Using a Python-based Energy Planning Tool
• FitsGeo: Python package for PHITS geometry development
• PyMGRIT: A Python Package for the parallel-in-time method MGRIT
• SEDBYS: A python-based SED Builder for Young Stars
• Introducing students to research codes: A short course on solving partial differential equations in Python
• TAPsolver: A Python package for the simulation and analysis of TAP reactor experiments
• SPInS, a pipeline for massive stellar parameter inference: A public Python tool to age-date, weigh, size up stars, and more
• reval: a Python package to determine the best number of clusters with stability-based relative clustering validation
• A Python Library for Exploratory Data Analysis and Knowledge Discovery on Twitter Data
• TB2J: a python package for computing magnetic interaction parameters
• SimpleSBML: A Python package for creating, editing, and interrogating SBML models: Verison 2.0
• PySAD: A Streaming Anomaly Detection Framework in Python
• TorchKGE: Knowledge Graph embedding in Python and PyTorch
• Development of a computational software in Python, used to study the materials resistance in beams
• Atomic Data Assessment with PyNeb
• MicroAnalyzer: A Python Tool for Automated Bacterial Analysis with Fluorescence Microscopy
• munuSSM: A python package for the μ-from-ν Supersymmetric Standard Model
• BOML: A Modularized Bilevel Optimization Library in Python for Meta Learning
• Extendible and Efficient Python Framework for Solving Evolution Equations with Stabilized Discontinuous Galerkin Methods
• PyROQ: a Python-based Reduced Order Quadrature Building Code for Fast Gravitational Wave Inference
• EZFF: Python Library for Multi-Objective Parameterization and Uncertainty Quantification of Interatomic Forcefields for Molecular Dynamics
• Scipp: Scientific data handling with labeled multi-dimensional arrays for C++ and Python
• Fast fully-reproducible streamlined serial/parallel Monte Carlo/MCMC simulations and visualizations via ParaMonte::Python library
• DIETERpy: a Python framework for The Dispatch and Investment Evaluation Tool with Endogenous Renewables
• Pyg4ometry: a Python library for the creation of Monte Carlo radiation transport physical geometries
• TextAttack: Lessons learned in designing Python frameworks for NLP
• The Dusty Evolved Star Kit (DESK): A Python package for fitting the Spectral Energy Distribution of Evolved Stars
• PYMT5: multi-mode translation of natural language and PYTHON code with transformers
• Network Security using Python
• On the performance of the Python programming language for serial and parallel scientific computations
• A Primer on Python for Life Science Researchers
• Introducing Python Programming for Engineering Scholars
• A facility for creating Python extensions in C++
• A Python Based Production System for High Volume Electronic Publishing
• Parallel High Performance Bootstrapping in Python
• A Computational Framework for Plasmonic Nanobiosensing
• Cloudknot: A Python Library to Run your Existing Code on AWS Batch
• Expert RF Feature Extraction to Win the Army RCO AI Signal Classification Challenge
• Deep and Ensemble Learning to Win the Army RCO AI Signal Classification Challenge
• Keeping the Chandra Satellite Cool with Python
• Fitting Human Decision Making Models using Python
• Astrodata
• Will Millennials Ever Get Married?
• Accelerating the Advancement of Data Science Education
• A Technical Anatomy of SPM.Python, a Scalable, Parallel Version of Python
• Dynamic Social Network Modeling of Diffuse Subcellular Morphologies
• Functional Uncertainty Constrained by Law and Experiment
• pgmpy: Probabilistic Graphical Models using Python
• Total Recall: flmake and the Quest for Reproducibility
• Equity, Scalability, and Sustainability of Data Science Infrastructure
• Fluctuation X-ray Scattering real-time app
• Composable Multi-Threading and Multi-Processing for Numeric Libraries
• Divisi: Learning from Semantic Networks and Sparse SVD
• DMTCP: Bringing Checkpoint-Restart to Python
• Converting Python Virtual Machine Code to C
• Scientific Computing with SciPy for Undergraduate Physics Majors
• Multidimensional Data Exploration with Glue
• Generalized earthquake classification
• Theano: A CPU and GPU Math Compiler in Python
• Hyperopt: A Python Library for Optimizing the Hyperparameters of Machine Learning Algorithms
• SkData: Data Sets and Algorithm Evaluation Protocols in Python
• Analyzing Particle Systems for Machine Learning and Data Visualization with freud
• Using Python to Study Rotational Velocity Distributions of Hot Stars
• HOOMD-blue version 3.0 A Modern, Extensible, Flexible, Object-Oriented API for Molecular Simulations
• Fitting and Estimating Parameter Confidence Limits with Sherpa
• SPORCO: A Python package for standard and convolutional sparse representations
• cesium: Open-Source Platform for Time-Series Inference
• Python as a First Programming Language for Biomedical Scientists
• librosa: Audio and Music Signal Analysis in Python
• UConnRCMPy: Python-based data analysis for Rapid Compression Machines
• Crab: A Recommendation Engine Framework for Python
• The Econ-ARK and HARK: Open Source Tools for Computational Economics
• CAF Implementation on FPGA Using Python Tools
• PyEDA: Data Structures and Algorithms for Electronic Design Automation
• Developing a Graph Convolution-Based Analysis Pipeline for Multi-Modal Neuroimage Data: An Application to Parkinson’s Disease
• Storing Reproducible Results from Computational Experiments using Scientific Python Packages
• Python Tools for Reproducible Research on Hyperbolic Problems
• BCE: Berkeley's Common Scientific Compute Environment for Research and Education
• A High Performance Robot Vision Algorithm Implemented in Python
• Measuring rainshafts: Bringing Python to bear on remote sensing data
• Compyle: a Python package for parallel computing
• Scientific Data Analysis and Visualization with Python, VTK, and ParaView
• gpustats: GPU Library for Statistical Computing in Python
• Python's Role in VisIt
• Using the Global Arrays Toolkit to Reimplement NumPy for Distributed Computation
• Netlist Analysis and Transformations Using SpyDrNet
• datreant: persistent, Pythonic trees for heterogeneous data
• Creating a Real-Time Recommendation Engine using Modified K-Means Clustering and Remote Sensing Signature Matching Algorithms
• Comparison of machine learning methods applied to birdsong element classification
• Practical Applications of Astropy
• Vision Spreadsheet: An Environment for Computer Vision
• Unusual Relationships: Python and Weaver Birds
• Constructing scientific programs using SymPy
• EarthSim: Flexible Environmental Simulation Workflows Entirely Within Jupyter Notebooks
• Safe handling instructions for missing data
• Java vs. Python Coverage of Introductory Programming Concepts: A Textbook Analysis
• Text and data mining scientific articles with allofplos
• pyjanitor: A Cleaner API for Cleaning Data
• Evolutionary Prototyping: "Add Later" Static Types for Python
• Automating Quantitative Confocal Microscopy Analysis
• Weather Forecast Accuracy Analysis
• Detection and characterization of interactions of genetic risk factors in disease
• Exploring Network Structure, Dynamics, and Function using NetworkX
• Interval Arithmetic: Python Implementation and Applications
• Experiences Using SciPy for Computer Vision Research
• The SciPy Documentation Project (Technical Overview)
• Matplotlib Solves the Riddle of the Sphinx
• The SciPy Documentation Project
• Pysynphot: A Python Re-Implementation of a Legacy App in Astronomy
• How the Large Synoptic Survey Telescope (LSST) is using Python
• Realtime Astronomical Time-series Classification and Broadcast Pipeline
• Analysis and Visualization of Multi-Scale Astrophysical Simulations Using Python and NumPy
• Mayavi: Making 3D Data Visualization Reusable
• Finite Element Modeling of Contact and Impact Problems Using Python
• Circuitscape: A Tool for Landscape Ecology
• Summarizing Complexity in High Dimensional Spaces
• Converting Python Functions to Dynamically Compiled C
• unPython: Converting Python Numerical Programs into C
• Cython tutorial
• Fast numerical computations with Cython
• High-Performance Code Generation Using CorePy
• Convert-XY: type-safe interchange of C++ and Python containers for NumPy extensions
• Parallel Kernels: An Architecture for Distributed Parallel Computing
• PaPy: Parallel and distributed data-processing pipelines in Python
• PMI - Parallel Method Invocation
• Sherpa: 1D/2D modeling and fitting in Python
• The FEMhub Project and Classroom Teaching of Numerical Methods
• Exploring the future of bioinformatics data sharing and mining with Pygr and Worldbase
• Nitime: time-series analysis for neuroimaging data
• Multiprocess System for Virtual Instruments in Python
• Neutron-scattering data acquisition and experiment automation with Python
• Progress Report: NumPy and SciPy Documentation in 2009
• The State of SciPy
• Python as a Discrete Event Simulation environment
• Codebraid: Live Code in Pandoc Markdown
• Introduction to Geometric Learning in Python with Geomstats
• Network visualizations with Pyvis and VisJS
• Rebuilding the Hubble Exposure Time Calculator
• Pythran: Enabling Static Optimization of Scientific Python Programs
• Using Python with Smoke and JWST Mirrors
• Sparse: A more modern sparse array library
• Adapted G-mode Clustering Method applied to Asteroid Taxonomy
• Modeling Sudoku Puzzles with Python
• Boost-histogram: High-Performance Histograms as Objects
• Case study: Real-world machine learning application for hardware failure detection
• LabbookDB: A Wet-Work-Tracking Database Application Framework
• The James Webb Space Telescope Data Calibration Pipeline
• Circumventing The Linker: Using SciPy's BLAS and LAPACK Within Cython
• Is Python an Appropriate Programming Language for Teaching Programming in Secondary Schools?
• Python – The Fastest Growing Programming Language
• Self-driving Lego Mindstorms Robot
• Bitmap Indices for Data Warehouses
• PyModel: Model-based testing in Python
• The Reference Model for Disease Progression
• Fcm - A python library for flow cytometry
• Learning from evolving data streams
• Mesa: An Agent-Based Modeling Framework
• PyHRF: A Python Library for the Analysis of fMRI Data Based on Local Estimation of the Hemodynamic Response Function
• Solving Polynomial Systems with phcpy
• HoloViews: Building Complex Visualizations Easily for Reproducible Science
• Ginga: an open-source astronomical image viewer and toolkit
• AI Based Voice Assistant Using Python
• Awkward Array: JSON-like data, NumPy-like idioms
• Bringing ipywidgets Support to plotly.py
• MONTE Python for Deep Space Navigation
• Structural Cohesion: Visualization and Heuristics for Fast Computation with NetworkX and matplotlib
• SciSheets: Providing the Power of Programming With The Simplicity of Spreadsheets
• Automated Image Quality Monitoring with IQMon
• The Climate Modelling Toolkit
• Beyond: A Portable Virtual World Simulation Framework
• Tell Me Something I Don't Know: Analyzing OkCupid Profiles
• PyRK: A Python Package For Nuclear Reactor Kinetics
• Teaching numerical methods with IPython notebooks and inquiry-based learning
• The Sacred Infrastructure for Computational Research
• Project-based introduction to scientific computing for physics majors
• Hyperopt-Sklearn: Automatic Hyperparameter Configuration for Scikit-Learn
• Automation of Inertial Fusion Target Design with Python
• Exploring Collaborative HPC Visualization Workflows using VisIt and Python
• Python Coding of Geospatial Processing in Web-based Mapping Applications
• PyTeCK: a Python-based automatic testing package for chemical kinetic models
• WrightSim: Using PyCUDA to Simulate Multidimensional Spectra
• Python Vuh: Mayan Calendrical Mathematics with Python
• Scaling Polygon Adjacency Algorithms to Big Data Geospatial Analysis
• Optimizing Python-Based Spectroscopic Data Processing on NERSC Supercomputers
• Hurricane Prediction with Python
• High-performance operator evaluations with ease of use: libCEED's Python interface
• FigureFirst: A Layout-first Approach for Scientific Figures
• IMUSim - Simulating inertial and magnetic sensor systems in Python
• VisPy: Harnessing The GPU For Fast, High-Level Visualization
• Python Machine Learning Projects
• Parallel Analysis in MDAnalysis using the Dask Parallel Computing Library
• Mailman – An Extensible Mailing List Manager Using Python
• Using Python to Construct a Scalable Parallel Nonlinear Wave Solver
• MatchPy: A Pattern Matching Library
• Spectral Analysis of Mitochondrial Dynamics: A Graph-Theoretic Approach to Understanding Subcellular Pathology
• White Noise Test: detecting autocorrelation and nonstationarities in long time series after ARIMA modeling
• A Real-Time 3D Audio Simulator for Cognitive Hearing Science
• Matched Filter Mismatch Losses in MPSK and MQAM Using Semi-Analytic BEP Modeling
• Exploring the Extended Kalman Filter for GPS Positioning Using Simulated User and Satellite Track Data
• Real-Time Digital Signal Processing Using pyaudio_helper and the ipywidgets
• pyDEM: Global Digital Elevation Model Analysis
• Widgets and Astropy: Accomplishing Productive Research with Undergraduates
• Dask: Parallel Computation with Blocked algorithms and Task Scheduling
• Organic Molecules in Space: Insights from the NASA Ames Molecular Database in the era of the James Webb Space Telescope
• Having your cake and eating it: Exploiting Python for programmer productivity and performance on micro-core architectures using ePython
• Building a Framework for Predictive Science
• Data Structures for Statistical Computing in Python
• Protein Folding with Python on Supercomputers
• PySPLIT: a Package for the Generation, Analysis, and Visualization of HYSPLIT Air Parcel Trajectories
• TrendVis: an Elegant Interface for dense, sparkline-like, quantitative visualizations of multiple series using matplotlib
• pulse2percept: A Python-based simulation framework for bionic vision
• Optimised finite difference computation from symbolic equations
• Causal Bayesian NetworkX
• Linting science prose and the science of prose linting
• SpacePy - A Python-based Library of Tools for the Space Sciences
• Campaign for IT literacy through FOSS and Spoken Tutorials
• SunPy: Python for Solar Physicists
• Harnessing the Power of Scientific Python to Investigate Biogeochemistry and Metaproteomes of the Central Pacific Ocean
• An intelligent shopping list based on the application of partitioning and machine learning algorithms
• Python meets systems neuroscience: affordable, scalable and open-source electrophysiology in awake, behaving rodents
• Python: a programming language for software integration and development
• PyStream: Compiling Python onto the GPU
• Geodynamic simulations in HPC with Python
• pandera: Statistical Data Validation of Pandas Dataframes
• Accelerating Scientific Python with Intel Optimizations
• MDAnalysis: A Python Package for the Rapid Analysis of Molecular Dynamics Simulations
• Combining Physics-Based and Data-Driven Modeling for Pressure Prediction in Well Construction
• Numerical Pyromaniacs: The Use of Python in Fire Research
• Validating Function Arguments in Python Signal Processing Applications
• Parameter Estimation Using the Python Package pymcmcstat
• Scikit-learn: Machine Learning in Python
• Reproducible Documents with PythonTeX
• Spreading the Adoption of Python in India: the FOSSEE Python Project
• PySPH: a reproducible and high-performance framework for smoothed particle hydrodynamics
• Binder 2.0 - Reproducible, interactive, sharable environments for science at scale
• Python for research and teaching economics
• Pydra - a flexible and lightweight dataflow engine for scientific analyses
• PyFront: Conversion of Python to C Extension Modules
• PyLZJD: An Easy to Use Tool for Machine Learning
• Python for Unified Research in Econometrics and Statistics
• Qiita: report of progress towards an open access microbiome data analysis and visualization platform
• A Programmatic Interface for Particle Plasma Simulation in Python
• Parkinson's Classification and Feature Extraction from Diffusion Tensor Images
• Leading magnetic fusion energy science into the big-and-fast data lane
• PySPH: A Python Framework for Smoothed Particle Hydrodynamics
• Python in Data Science Research and Education
• Audio-Visual Speech Recognition using SciPy
• lpEdit: an editor to facilitate reproducible analysis via literate programming
• PyDDA: A new Pythonic Wind Retrieval Package
• QuTiP: A framework for the dynamics of open quantum systems using SciPy and Cython
• SHADOW: A workflow scheduling algorithm reference and testing framework
• Validated numerics with Python: the ValidiPy package
• Creating a browser-based virtual computer lab for classroom instruction
• Relation: The Missing Container
• Better and faster hyperparameter optimization with Dask
• Statsmodels: Econometric and Statistical Modeling with Python
• Software Engineering as Research Method: Aligning Roles in Econ-ARK
• Visualizing physiological signals in real-time
• Spatio-temporal analysis of socioeconomic neighborhoods: The Open Source Longitudinal Neighborhood Analysis Package (OSLNAP)
• Visualization of Bioinformatics Data with Dash Bio
• Bringing Parallel Performance to Python with Domain-Specific Selective Embedded Just-in-Time Specialization
• PMDA - Parallel Molecular Dynamics Analysis
• cphVB: A System for Automated Runtime Optimization and Parallelization of Vectorized Applications
• N-th-order Accurate, Distributed Interpolation Library
• Implementing the SMS server, or why I switched from Tcl to Python
• Google App Engine Python
• Statistics and Machine Learning in Python
• TracPy: Wrapping the Fortran Lagrangian trajectory model TRACMASS
• OpenMG: A New Multigrid Implementation in Python
• Design and Implementation of pyPRISM: A Polymer Liquid-State Theory Framework
• Improving efficiency and repeatability of lake volume estimates using Python
• Modeling the Earth with Fatiando a Terra
• A Bayesian's journey to a better research workflow
• Frequentism and Bayesianism: A Python-driven Primer
• Scalable Feature Extraction with Aerial and Satellite Imagery
• Virtual Method Tables in Python
• signac: A Python framework for data and workflow management
• Blaze: Building A Foundation for Array-Oriented Computing in Python
• ChiantiPy: a Python package for Astrophysical Spectroscopy
• Yaksh: Facilitating Learning by Doing
• Building a Cloud Service for Reproducible Simulation Management
• Launching Python Applications on Peta-scale Massively Parallel Systems
• Falsify your Software: validating scientific code with property-based testing
• Towards an Unsupervised Spatiotemporal Representation of Cilia Video Using A Modular Generative Pipeline
• Simulating X-ray Observations with Python
• Time Series Analysis in Python with statsmodels