v2.3.0

New Features / Search Algorithm

• Make decoy generation scheme configurable via fdr.decoy_type by @WassimG in #877
• Add quantile feature transform to the FDR classifier by @GeorgWa in #869
• Break q-value ties decoys first by @GeorgWa in #872
• Leave the IDF features out of the FDR classifier by default by @Desperadus in #874
• Turn off candidate context features by default by @Desperadus in #883
• Correct RT-dependent intensity drift before label-free quantification by @GeorgWa in #870
• Run fragment competition with the rust extraction backend by @Desperadus in #885

Improvements / Bug fixes

• Expose the intensity drift correction switch in the GUI by @GeorgWa in #871
• Cut the FDR step's memory by @Desperadus in #884
• Cap thread_count at 61 on Windows with Python < 3.13 by @Xraytonex in #882
• Fix GUI console replaying the log after navigating back to it by @Xraytonex in #881

Technical

• bump alphadia-search-rs to version 1.6.0 by @mschwoer in #898
• Cap pyarrow below 26 to stay compatible with numpy<2 by @mschwoer in #890
• Drop the unused fragment quant matrix export by @GeorgWa in #891
• Collect search plan output file names in one registry by @GeorgWa in #892
• Separate building from writing in SearchPlanOutput by @GeorgWa in #893
• Fix fragment-competition tests broken by the #884/#885 merge by @Desperadus in #897

New Contributors

• @WassimG made their first contribution in #877
• @Desperadus made their first contribution in #874
• @Xraytonex made their first contribution in #881

Full Changelog: v2.2.0...v2.3.0