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v0.0.1

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@mansanlab mansanlab released this 28 Oct 03:27
· 10 commits to main since this release
v0.0.1
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Release Summary for AlphaFoldFetch

AlphaFoldFetch is a new command-line tool designed to simplify downloading AlphaFold protein structure predictions using UniProt IDs or UniProt-formatted FASTA files. It provides researchers with easy access to structural predictions for specific proteomes or sets of proteins that may not be available on AlphaFold’s bulk download page.

Key Features

  • Input Options: Supports both UniProt IDs and UniProt-formatted FASTA files as inputs, making it adaptable for single or batch protein queries.
  • Download Customization: Allows users to specify file type (.pdb or .cif), file compression (.gz option), AlphaFold model version (v1-4), and optimized download parameters to handle large-scale queries.
  • Efficient Download Management: Users can adjust parameters for the number of simultaneous downloads (--n-sync) and concurrent file writes (--n-save) to optimize performance on larger datasets.
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