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Adding the FAIR metrics manuscript to the catalog #6

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dhimmel opened this issue Sep 3, 2019 · 2 comments
Closed

Adding the FAIR metrics manuscript to the catalog #6

dhimmel opened this issue Sep 3, 2019 · 2 comments

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@dhimmel
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dhimmel commented Sep 3, 2019

@sbonaretti's manuscript titled "Two real use cases of FAIR maturity indicators in the life sciences" is now on bioRxiv at https://doi.org/10.1101/739334. The source repo is at https://github.com/sbonaretti/FAIR_metrics.

Serena used a modified manubot setup where the manuscript was built locally rather than using CI. The repo doesn't host an HTML version of the manuscript via GitHub pages. Our software to populate the catalog from catalog.yml requires a html_url I believe to retrieve metadata. Possibly we could use https://rawcdn.githack.com/sbonaretti/FAIR_metrics/c12a837e1b0505ffa7a3cd311e3fa69b5b940d2e/paper/manubot/webpage/v/local/index.html, which seems to produce correct metadata:

manubot cite url:https://rawcdn.githack.com/sbonaretti/FAIR_metrics/c12a837e1b0505ffa7a3cd311e3fa69b5b940d2e/paper/manubot/webpage/v/local/index.html
[
  {
    "id": "1Hl6qxW9W",
    "type": "webpage",
    "title": "Two real use cases of FAIR maturity indicators in the life sciences",
    "URL": "https://rawcdn.githack.com/sbonaretti/FAIR_metrics/c12a837e1b0505ffa7a3cd311e3fa69b5b940d2e/paper/manubot/webpage/v/local/index.html",
    "language": "en-US",
    "author": [
      {
        "family": "Bonaretti",
        "given": "Serena"
      },
      {
        "family": "Willighagen",
        "given": "Egon"
      }
    ],
    "issued": {
      "date-parts": [
        [
          "2019",
          8,
          11
        ]
      ]
    },
    "accessed": {
      "date-parts": [
        [
          "2019",
          9,
          3
        ]
      ]
    },
    "note": "This CSL JSON Item was automatically generated by Manubot v0.2.3 using citation-by-identifier.\nstandard_id: url:https://rawcdn.githack.com/sbonaretti/FAIR_metrics/c12a837e1b0505ffa7a3cd311e3fa69b5b940d2e/paper/manubot/webpage/v/local/index.html"
  }
]

Also there are some nice figures in the manuscript. @vincerubinetti did you want to create a PNG screenshot that we could drag into this issue and use as the thumbnail?

dhimmel added a commit that referenced this issue Sep 3, 2019
@vincerubinetti
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image

dhimmel added a commit that referenced this issue Sep 3, 2019
dhimmel added a commit that referenced this issue Sep 3, 2019
@dhimmel
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dhimmel commented Sep 3, 2019

Added to the catalog in e7c7e36. Now visible at https://manubot.org/catalog/

image

Note that the way we added the html_url is versioned, so if the manuscript is updated, our script won't automatically get the new metadata. So @sbonaretti let us know if there's an udpate or submit a PR to update the githack.com URL:

html_url: https://rawcdn.githack.com/sbonaretti/FAIR_metrics/c12a837e1b0505ffa7a3cd311e3fa69b5b940d2e/paper/manubot/webpage/v/local/index.html

@dhimmel dhimmel closed this as completed Sep 3, 2019
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