MetaGeneMark Installation

[owenoutlaw]

Hello Todd & Sergey,

I am trying to implement MetaGenMark in metAMOS. Are there instructions anywhere on how to accomplish this? I have amos and metAMOS installed and can run the test datasets. I have successfully downloaded MetaGenMark but am unsure where it should be installed. Thanks in advanced.

Jarrod

[skoren]

If you add the directory containing MetaGeneMark's executable (gmhmmp) to your PATH variable, metAMOS will find it and allow you to use it.

[liudl2013]

hello, could you please send me a copy of MetaGeneMark ? i can't open the download webpage successfully... thank you very much...

[skoren]

We do not distribute MetaGeneMark due to its license agreement and it (along with a license file) must be downloaded from the authors. It appears the server is currently down so I would suggest trying again later or contacting MetaGeneMark's authors.

[liudl2013]

oh~~~ ok... thank you

[fereshtehvosta]

Hi
i don't know how I can install MetGeneMark and didn't find any instruction for this! I should to install metAMOS and then install MetGeneMark?? Can you help me and give a guideline in order toknow what i should to do step by step?
Thank you very much.

[skoren]

Install metagenemark following the instructions on the source site: http://exon.gatech.edu/license_download.cgi and add it to your path. MetAMOS will automatically find it then.