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MetaGeneMark Installation #94

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owenoutlaw opened this Issue Nov 26, 2013 · 6 comments

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@owenoutlaw

owenoutlaw commented Nov 26, 2013

Hello Todd & Sergey,

I am trying to implement MetaGenMark in metAMOS. Are there instructions anywhere on how to accomplish this? I have amos and metAMOS installed and can run the test datasets. I have successfully downloaded MetaGenMark but am unsure where it should be installed. Thanks in advanced.

Jarrod

@skoren

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skoren commented Nov 26, 2013

If you add the directory containing MetaGeneMark's executable (gmhmmp) to your PATH variable, metAMOS will find it and allow you to use it.

@skoren skoren closed this Nov 26, 2013

@liudl2013

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liudl2013 commented May 28, 2014

hello, could you please send me a copy of MetaGeneMark ? i can't open the download webpage successfully... thank you very much...

@skoren

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skoren commented May 28, 2014

We do not distribute MetaGeneMark due to its license agreement and it (along with a license file) must be downloaded from the authors. It appears the server is currently down so I would suggest trying again later or contacting MetaGeneMark's authors.

@liudl2013

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liudl2013 commented May 28, 2014

oh~~~ ok... thank you

@fereshtehvosta

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fereshtehvosta commented Nov 2, 2017

Hi
i don't know how I can install MetGeneMark and didn't find any instruction for this! I should to install metAMOS and then install MetGeneMark?? Can you help me and give a guideline in order toknow what i should to do step by step?
Thank you very much.

@skoren

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skoren commented Nov 2, 2017

Install metagenemark following the instructions on the source site: http://exon.gatech.edu/license_download.cgi and add it to your path. MetAMOS will automatically find it then.

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