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bin adding source files Jul 17, 2014
examples/mers_virus add examples dir Jul 19, 2014
muscle fix muscle build Jul 18, 2014
script add simple rearrangement script Oct 29, 2014
.travis.yml update to linux only for now Dec 30, 2014
CITATION Update CITATION Jul 23, 2014
INSTALL adding source files Jul 17, 2014
LICENSE Update to LICENSE Apr 16, 2015 update to v1.2 Mar 24, 2015 simplify, point to readthedocs page for documentation Feb 10, 2015 fix muscle build Jul 18, 2014 Update Dec 12, 2014 add tc build script for osx Dec 12, 2014 fix muscle build Jul 18, 2014 adding source files Jul 17, 2014 adding source files Jul 17, 2014
template.ini param section header change Feb 5, 2015

Parsnp is a command-line-tool for efficient microbial core genome alignment and SNP detection. Parsnp was designed to work in tandem with Gingr, a flexible platform for visualizing genome alignments and phylogenetic trees; both Parsnp and Gingr form part of the Harvest suite :

Parsnp is primarily distributed as a binary for Linux or OS X (see Parsnp link above ). However, the source and build scripts are provided for incompatible platforms or for development purposes.

CITATION provides details on how to cite Parsnp.

INSTALL provides instructions for building from source and installing.

LICENSE provides licensing information.

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