/parsnp

No description, website, or topics provided.
  1. C++ 52.4%
  2. Shell 33.8%
  3. Makefile 9.7%
  4. Python 2.7%
  5. C 1.4%
C++ Shell Makefile Python C

Clone with HTTPS

Use Git or checkout with SVN using the web URL.

Download ZIP
Find file
Switch branches/tags
Nothing to show
Latest commit 63bea13 Apr 17, 2015 @treangen treangen Update to LICENSE
Permalink
Failed to load latest commit information.
bin adding source files Jul 17, 2014
examples/mers_virus
muscle fix muscle build Jul 18, 2014
script add simple rearrangement script Oct 29, 2014
src tweaks to unaligned output Feb 5, 2015
.travis.yml update to linux only for now Dec 30, 2014
CITATION Update CITATION Jul 23, 2014
INSTALL adding source files Jul 17, 2014
LICENSE
Makefile.am update build dirs Jul 18, 2014
Parsnp.py
README.md
autogen.sh name change Jul 18, 2014
bootstrap.sh
build_parsnp_linux.sh Update build_parsnp_linux.sh Dec 12, 2014
build_parsnp_osx.sh add tc build script for osx Dec 12, 2014
configure.ac fix muscle build Jul 18, 2014
install.py
setup.py adding source files Jul 17, 2014
template.ini param section header change Feb 5, 2015

README.md

Parsnp is a command-line-tool for efficient microbial core genome alignment and SNP detection. Parsnp was designed to work in tandem with Gingr, a flexible platform for visualizing genome alignments and phylogenetic trees; both Parsnp and Gingr form part of the Harvest suite :

Parsnp is primarily distributed as a binary for Linux or OS X (see Parsnp link above ). However, the source and build scripts are provided for incompatible platforms or for development purposes.

CITATION provides details on how to cite Parsnp.

INSTALL provides instructions for building from source and installing.

LICENSE provides licensing information.