Parsnp is a command-line-tool for efficient microbial core genome alignment and SNP detection. Parsnp was designed to work in tandem with Gingr, a flexible platform for visualizing genome alignments and phylogenetic trees; both Parsnp and Gingr form part of the Harvest suite :
Parsnp is primarily distributed as a binary for Linux or OS X (see Parsnp link above ). However, the source and build scripts are provided for incompatible platforms or for development purposes.
CITATION provides details on how to cite Parsnp.
INSTALL provides instructions for building from source and installing.
LICENSE provides licensing information.