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@markowetzlab

Markowetz lab @ CRUK Cambridge Institute

Developing technologies for doctors to make better decisions faster

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  1. Drews2022_CIN_Compendium Drews2022_CIN_Compendium Public

    Main repository for Drews et al. (Nature, 2022)

    HTML 37 6

  2. scDNAseq-workflow scDNAseq-workflow Public

    calling absolute copy numbers on single cell DNA sequencing data - stagging repo for public release

    R 4 2

Repositories

Showing 10 of 31 repositories
  • slide-classifier Public

    Triage and Diagnosis of Cytosponge Histopathology

    markowetzlab/slide-classifier’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 24, 2024
  • CLAM Public Forked from mahmoodlab/CLAM

    Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

    markowetzlab/CLAM’s past year of commit activity
    Python 0 GPL-3.0 362 1 0 Updated Oct 16, 2024
  • CINSignatureQuantification Public

    Quantifying copy number signatures from absolute copy number profiles

    markowetzlab/CINSignatureQuantification’s past year of commit activity
    R 23 4 1 0 Updated Oct 11, 2024
  • scAbsolute Public

    Measuring single-cell ploidy and cell cycle status in single-cell DNA sequencing data

    markowetzlab/scAbsolute’s past year of commit activity
    R 3 3 1 1 Updated Aug 20, 2024
  • BiasedUrn Public

    Copy of the BiasedUrn Packaged. I simply changed MAXCOLORS from 32 to 50k

    markowetzlab/BiasedUrn’s past year of commit activity
    C++ 0 0 0 0 Updated Jul 30, 2024
  • tissue_segmentation Public

    This script takes whole slide images (typically .svs or .ndpi files; either from biospsies or Cytosponge etc) as an input and returns an image file (typically .png file) of the mask of where the tissue is located (black: tissue, white: background).

    markowetzlab/tissue_segmentation’s past year of commit activity
    Python 7 MIT 1 0 0 Updated Jul 22, 2024
  • geojson_xml Public

    A tool to convert geojson files (e.g., used in QuPath) into xml files (e.g., used in ASAP) and vice versa.

    markowetzlab/geojson_xml’s past year of commit activity
    Python 0 1 0 0 Updated Jun 9, 2024
  • scDNAseq-workflow Public

    calling absolute copy numbers on single cell DNA sequencing data - stagging repo for public release

    markowetzlab/scDNAseq-workflow’s past year of commit activity
    R 4 2 0 0 Updated Apr 17, 2024
  • CNsignatures Public

    This is data and code from our first paper on copy number signatures (Macintyre et al., Nat Gen, 2018).

    markowetzlab/CNsignatures’s past year of commit activity
    HTML 6 MIT 2 3 0 Updated Aug 30, 2023
  • Drews2022_CIN_Compendium Public

    Main repository for Drews et al. (Nature, 2022)

    markowetzlab/Drews2022_CIN_Compendium’s past year of commit activity
    HTML 37 6 1 0 Updated Aug 14, 2023

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