Basemap install failing issue in MacOS

[SongJaeIn]

Hi, I tried to install Basemap via pip in Mac OS, but I have encountered an error.
I also tried with another version (1.3.0), but those resulted in another error related to GEOS (it is installed and the environment variable is set correctly though).

Really appreciate your effort on this outstanding tool and thank you in advance for your support.

following is the log for installation of v 1.3.3:

$pip install basemap
DEPRECATION: Configuring installation scheme with distutils config files is deprecated and will no longer work in the near future. If you are using a Homebrew or Linuxbrew Python, please see discussion at Homebrew/homebrew-core#76621
Collecting basemap
Using cached basemap-1.3.3.zip (155 kB)
Installing build dependencies ... error
error: subprocess-exited-with-error

× pip subprocess to install build dependencies did not run successfully.
│ exit code: 1
╰─> [553 lines of output]
Ignoring numpy: markers 'python_version >= "3.10"' don't match your environment
Ignoring numpy: markers 'python_version == "2.6" or (python_version >= "3.2" and python_version <= "3.3")' don't match your environment
Ignoring cython: markers 'python_version == "3.2"' don't match your environment
Collecting setuptools
Downloading setuptools-63.4.1-py3-none-any.whl (1.2 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 7.2 MB/s eta 0:00:00
Collecting wheel
Using cached wheel-0.37.1-py2.py3-none-any.whl (35 kB)
Collecting numpy==1.16.6
Using cached numpy-1.16.6.zip (5.1 MB)
Preparing metadata (setup.py): started
Preparing metadata (setup.py): finished with status 'done'
Collecting cython<3.1,>=0.29
Using cached Cython-0.29.32-py2.py3-none-any.whl (986 kB)
Building wheels for collected packages: numpy
Building wheel for numpy (setup.py): started
Building wheel for numpy (setup.py): finished with status 'error'
error: subprocess-exited-with-error

    × python setup.py bdist_wheel did not run successfully.
    │ exit code: 1
    ╰─> [239 lines of output]
        Running from numpy source directory.
        /private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/misc_util.py:476: SyntaxWarning: "is" with a literal. Did you mean "=="?
          return is_string(s) and ('*' in s or '?' is s)
        blas_opt_info:
        blas_mkl_info:
        customize UnixCCompiler
          libraries mkl_rt not found in ['/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib', '/usr/local/lib', '/usr/lib']
          NOT AVAILABLE

        blis_info:
        customize UnixCCompiler
          libraries blis not found in ['/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib', '/usr/local/lib', '/usr/lib']
          NOT AVAILABLE

        openblas_info:
        customize UnixCCompiler
        customize UnixCCompiler
          libraries openblas not found in ['/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib', '/usr/local/lib', '/usr/lib']
          NOT AVAILABLE

        atlas_3_10_blas_threads_info:
        Setting PTATLAS=ATLAS
        customize UnixCCompiler
          libraries tatlas not found in ['/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib', '/usr/local/lib', '/usr/lib']
          NOT AVAILABLE

        atlas_3_10_blas_info:
        customize UnixCCompiler
          libraries satlas not found in ['/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib', '/usr/local/lib', '/usr/lib']
          NOT AVAILABLE

        atlas_blas_threads_info:
        Setting PTATLAS=ATLAS
        customize UnixCCompiler
          libraries ptf77blas,ptcblas,atlas not found in ['/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib', '/usr/local/lib', '/usr/lib']
          NOT AVAILABLE

        atlas_blas_info:
        customize UnixCCompiler
          libraries f77blas,cblas,atlas not found in ['/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib', '/usr/local/lib', '/usr/lib']
          NOT AVAILABLE

        accelerate_info:
          FOUND:
            extra_compile_args = ['-msse3', '-I/System/Library/Frameworks/vecLib.framework/Headers']
            extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
            define_macros = [('NO_ATLAS_INFO', 3), ('HAVE_CBLAS', None)]

          FOUND:
            extra_compile_args = ['-msse3', '-I/System/Library/Frameworks/vecLib.framework/Headers']
            extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
            define_macros = [('NO_ATLAS_INFO', 3), ('HAVE_CBLAS', None)]

        /bin/sh: svnversion: command not found
        non-existing path in 'numpy/distutils': 'site.cfg'
        lapack_opt_info:
        lapack_mkl_info:
        customize UnixCCompiler
          libraries mkl_rt not found in ['/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib', '/usr/local/lib', '/usr/lib']
          NOT AVAILABLE

        openblas_lapack_info:
        customize UnixCCompiler
        customize UnixCCompiler
          libraries openblas not found in ['/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib', '/usr/local/lib', '/usr/lib']
          NOT AVAILABLE

        openblas_clapack_info:
        customize UnixCCompiler
        customize UnixCCompiler
          libraries openblas,lapack not found in ['/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib', '/usr/local/lib', '/usr/lib']
          NOT AVAILABLE

        atlas_3_10_threads_info:
        Setting PTATLAS=ATLAS
        customize UnixCCompiler
          libraries lapack_atlas not found in /usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib
        customize UnixCCompiler
          libraries tatlas,tatlas not found in /usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib
        customize UnixCCompiler
          libraries lapack_atlas not found in /usr/local/lib
        customize UnixCCompiler
          libraries tatlas,tatlas not found in /usr/local/lib
        customize UnixCCompiler
          libraries lapack_atlas not found in /usr/lib
        customize UnixCCompiler
          libraries tatlas,tatlas not found in /usr/lib
        <class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
          NOT AVAILABLE

        atlas_3_10_info:
        customize UnixCCompiler
          libraries lapack_atlas not found in /usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib
        customize UnixCCompiler
          libraries satlas,satlas not found in /usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib
        customize UnixCCompiler
          libraries lapack_atlas not found in /usr/local/lib
        customize UnixCCompiler
          libraries satlas,satlas not found in /usr/local/lib
        customize UnixCCompiler
          libraries lapack_atlas not found in /usr/lib
        customize UnixCCompiler
          libraries satlas,satlas not found in /usr/lib
        <class 'numpy.distutils.system_info.atlas_3_10_info'>
          NOT AVAILABLE

        atlas_threads_info:
        Setting PTATLAS=ATLAS
        customize UnixCCompiler
          libraries lapack_atlas not found in /usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib
        customize UnixCCompiler
          libraries ptf77blas,ptcblas,atlas not found in /usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib
        customize UnixCCompiler
          libraries lapack_atlas not found in /usr/local/lib
        customize UnixCCompiler
          libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
        customize UnixCCompiler
          libraries lapack_atlas not found in /usr/lib
        customize UnixCCompiler
          libraries ptf77blas,ptcblas,atlas not found in /usr/lib
        <class 'numpy.distutils.system_info.atlas_threads_info'>
          NOT AVAILABLE

        atlas_info:
        customize UnixCCompiler
          libraries lapack_atlas not found in /usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib
        customize UnixCCompiler
          libraries f77blas,cblas,atlas not found in /usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib
        customize UnixCCompiler
          libraries lapack_atlas not found in /usr/local/lib
        customize UnixCCompiler
          libraries f77blas,cblas,atlas not found in /usr/local/lib
        customize UnixCCompiler
          libraries lapack_atlas not found in /usr/lib
        customize UnixCCompiler
          libraries f77blas,cblas,atlas not found in /usr/lib
        <class 'numpy.distutils.system_info.atlas_info'>
          NOT AVAILABLE

          FOUND:
            extra_compile_args = ['-msse3', '-I/System/Library/Frameworks/vecLib.framework/Headers']
            extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
            define_macros = [('NO_ATLAS_INFO', 3), ('HAVE_CBLAS', None)]

        /usr/local/lib/python3.9/site-packages/setuptools/_distutils/dist.py:275: UserWarning: Unknown distribution option: 'define_macros'
          warnings.warn(msg)
        running bdist_wheel
        running build
        running config_cc
        unifing config_cc, config, build_clib, build_ext, build commands --compiler options
        running config_fc
        unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
        running build_src
        build_src
        building py_modules sources
        creating build
        creating build/src.macosx-12-x86_64-3.9
        creating build/src.macosx-12-x86_64-3.9/numpy
        creating build/src.macosx-12-x86_64-3.9/numpy/distutils
        building library "npymath" sources
        get_default_fcompiler: matching types: '['gnu95', 'nag', 'absoft', 'ibm', 'intel', 'gnu', 'g95', 'pg']'
        customize Gnu95FCompiler
        Found executable /usr/local/bin/gfortran
        Traceback (most recent call last):
          File "<string>", line 2, in <module>
          File "<pip-setuptools-caller>", line 34, in <module>
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/setup.py", line 419, in <module>
            setup_package()
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/setup.py", line 411, in setup_package
            setup(**metadata)
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/core.py", line 171, in setup
            return old_setup(**new_attr)
          File "/usr/local/lib/python3.9/site-packages/setuptools/__init__.py", line 87, in setup
            return distutils.core.setup(**attrs)
          File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 148, in setup
            return run_commands(dist)
          File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 163, in run_commands
            dist.run_commands()
          File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 967, in run_commands
            self.run_command(cmd)
          File "/usr/local/lib/python3.9/site-packages/setuptools/dist.py", line 1229, in run_command
            super().run_command(command)
          File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 986, in run_command
            cmd_obj.run()
          File "/usr/local/lib/python3.9/site-packages/wheel/bdist_wheel.py", line 299, in run
            self.run_command('build')
          File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/cmd.py", line 313, in run_command
            self.distribution.run_command(command)
          File "/usr/local/lib/python3.9/site-packages/setuptools/dist.py", line 1229, in run_command
            super().run_command(command)
          File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 986, in run_command
            cmd_obj.run()
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/command/build.py", line 47, in run
            old_build.run(self)
          File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/command/build.py", line 136, in run
            self.run_command(cmd_name)
          File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/cmd.py", line 313, in run_command
            self.distribution.run_command(command)
          File "/usr/local/lib/python3.9/site-packages/setuptools/dist.py", line 1229, in run_command
            super().run_command(command)
          File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 986, in run_command
            cmd_obj.run()
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/command/build_src.py", line 148, in run
            self.build_sources()
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/command/build_src.py", line 159, in build_sources
            self.build_library_sources(*libname_info)
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/command/build_src.py", line 292, in build_library_sources
            sources = self.generate_sources(sources, (lib_name, build_info))
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/command/build_src.py", line 375, in generate_sources
            source = func(extension, build_dir)
          File "numpy/core/setup.py", line 665, in get_mathlib_info
            st = config_cmd.try_link('int main(void) { return 0;}')
          File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/command/config.py", line 241, in try_link
            self._check_compiler()
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/command/config.py", line 80, in _check_compiler
            self.fcompiler = new_fcompiler(compiler=self.fcompiler,
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/fcompiler/__init__.py", line 884, in new_fcompiler
            compiler = get_default_fcompiler(plat, requiref90=requiref90,
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/fcompiler/__init__.py", line 855, in get_default_fcompiler
            compiler_type =  _find_existing_fcompiler(matching_compiler_types,
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/fcompiler/__init__.py", line 806, in _find_existing_fcompiler
            c.customize(dist)
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/fcompiler/__init__.py", line 530, in customize
            linker_so_flags = self.flag_vars.linker_so
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/fcompiler/environment.py", line 40, in __getattr__
            return self._get_var(name, conf_desc)
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/fcompiler/environment.py", line 56, in _get_var
            var = self._hook_handler(name, hook)
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/fcompiler/__init__.py", line 709, in _environment_hook
            return hook()
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/fcompiler/gnu.py", line 353, in get_flags_linker_so
            flags = GnuFCompiler.get_flags_linker_so(self)
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/fcompiler/gnu.py", line 144, in get_flags_linker_so
            os.environ['MACOSX_DEPLOYMENT_TARGET'] = target
          File "/usr/local/Cellar/python@3.9/3.9.13_1/Frameworks/Python.framework/Versions/3.9/lib/python3.9/os.py", line 684, in __setitem__
            value = self.encodevalue(value)
          File "/usr/local/Cellar/python@3.9/3.9.13_1/Frameworks/Python.framework/Versions/3.9/lib/python3.9/os.py", line 756, in encode
            raise TypeError("str expected, not %s" % type(value).__name__)
        TypeError: str expected, not int
        [end of output]

    note: This error originates from a subprocess, and is likely not a problem with pip.
    ERROR: Failed building wheel for numpy
    Running setup.py clean for numpy
    error: subprocess-exited-with-error

    × python setup.py clean did not run successfully.
    │ exit code: 1
    ╰─> [10 lines of output]
        Running from numpy source directory.

        `setup.py clean` is not supported, use one of the following instead:

          - `git clean -xdf` (cleans all files)
          - `git clean -Xdf` (cleans all versioned files, doesn't touch
                              files that aren't checked into the git repo)

        Add `--force` to your command to use it anyway if you must (unsupported).

        [end of output]

    note: This error originates from a subprocess, and is likely not a problem with pip.
    ERROR: Failed cleaning build dir for numpy
  Failed to build numpy
  Installing collected packages: wheel, setuptools, numpy, cython
    Running setup.py install for numpy: started
    Running setup.py install for numpy: finished with status 'error'
    error: subprocess-exited-with-error

    × Running setup.py install for numpy did not run successfully.
    │ exit code: 1
    ╰─> [248 lines of output]
        Running from numpy source directory.

        Note: if you need reliable uninstall behavior, then install
        with pip instead of using `setup.py install`:

          - `pip install .`       (from a git repo or downloaded source
                                   release)
          - `pip install numpy`   (last NumPy release on PyPi)


        blas_opt_info:
        blas_mkl_info:
        customize UnixCCompiler
          libraries mkl_rt not found in ['/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib', '/usr/local/lib', '/usr/lib']
          NOT AVAILABLE

        blis_info:
        customize UnixCCompiler
          libraries blis not found in ['/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib', '/usr/local/lib', '/usr/lib']
          NOT AVAILABLE

        openblas_info:
        customize UnixCCompiler
        customize UnixCCompiler
          libraries openblas not found in ['/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib', '/usr/local/lib', '/usr/lib']
          NOT AVAILABLE

        atlas_3_10_blas_threads_info:
        Setting PTATLAS=ATLAS
        customize UnixCCompiler
          libraries tatlas not found in ['/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib', '/usr/local/lib', '/usr/lib']
          NOT AVAILABLE

        atlas_3_10_blas_info:
        customize UnixCCompiler
          libraries satlas not found in ['/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib', '/usr/local/lib', '/usr/lib']
          NOT AVAILABLE

        atlas_blas_threads_info:
        Setting PTATLAS=ATLAS
        customize UnixCCompiler
          libraries ptf77blas,ptcblas,atlas not found in ['/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib', '/usr/local/lib', '/usr/lib']
          NOT AVAILABLE

        atlas_blas_info:
        customize UnixCCompiler
          libraries f77blas,cblas,atlas not found in ['/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib', '/usr/local/lib', '/usr/lib']
          NOT AVAILABLE

        accelerate_info:
          FOUND:
            extra_compile_args = ['-msse3', '-I/System/Library/Frameworks/vecLib.framework/Headers']
            extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
            define_macros = [('NO_ATLAS_INFO', 3), ('HAVE_CBLAS', None)]

          FOUND:
            extra_compile_args = ['-msse3', '-I/System/Library/Frameworks/vecLib.framework/Headers']
            extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
            define_macros = [('NO_ATLAS_INFO', 3), ('HAVE_CBLAS', None)]

        /bin/sh: svnversion: command not found
        non-existing path in 'numpy/distutils': 'site.cfg'
        lapack_opt_info:
        lapack_mkl_info:
        customize UnixCCompiler
          libraries mkl_rt not found in ['/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib', '/usr/local/lib', '/usr/lib']
          NOT AVAILABLE

        openblas_lapack_info:
        customize UnixCCompiler
        customize UnixCCompiler
          libraries openblas not found in ['/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib', '/usr/local/lib', '/usr/lib']
          NOT AVAILABLE

        openblas_clapack_info:
        customize UnixCCompiler
        customize UnixCCompiler
          libraries openblas,lapack not found in ['/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib', '/usr/local/lib', '/usr/lib']
          NOT AVAILABLE

        atlas_3_10_threads_info:
        Setting PTATLAS=ATLAS
        customize UnixCCompiler
          libraries lapack_atlas not found in /usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib
        customize UnixCCompiler
          libraries tatlas,tatlas not found in /usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib
        customize UnixCCompiler
          libraries lapack_atlas not found in /usr/local/lib
        customize UnixCCompiler
          libraries tatlas,tatlas not found in /usr/local/lib
        customize UnixCCompiler
          libraries lapack_atlas not found in /usr/lib
        customize UnixCCompiler
          libraries tatlas,tatlas not found in /usr/lib
        <class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
          NOT AVAILABLE

        atlas_3_10_info:
        customize UnixCCompiler
          libraries lapack_atlas not found in /usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib
        customize UnixCCompiler
          libraries satlas,satlas not found in /usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib
        customize UnixCCompiler
          libraries lapack_atlas not found in /usr/local/lib
        customize UnixCCompiler
          libraries satlas,satlas not found in /usr/local/lib
        customize UnixCCompiler
          libraries lapack_atlas not found in /usr/lib
        customize UnixCCompiler
          libraries satlas,satlas not found in /usr/lib
        <class 'numpy.distutils.system_info.atlas_3_10_info'>
          NOT AVAILABLE

        atlas_threads_info:
        Setting PTATLAS=ATLAS
        customize UnixCCompiler
          libraries lapack_atlas not found in /usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib
        customize UnixCCompiler
          libraries ptf77blas,ptcblas,atlas not found in /usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib
        customize UnixCCompiler
          libraries lapack_atlas not found in /usr/local/lib
        customize UnixCCompiler
          libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
        customize UnixCCompiler
          libraries lapack_atlas not found in /usr/lib
        customize UnixCCompiler
          libraries ptf77blas,ptcblas,atlas not found in /usr/lib
        <class 'numpy.distutils.system_info.atlas_threads_info'>
          NOT AVAILABLE

        atlas_info:
        customize UnixCCompiler
          libraries lapack_atlas not found in /usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib
        customize UnixCCompiler
          libraries f77blas,cblas,atlas not found in /usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/lib
        customize UnixCCompiler
          libraries lapack_atlas not found in /usr/local/lib
        customize UnixCCompiler
          libraries f77blas,cblas,atlas not found in /usr/local/lib
        customize UnixCCompiler
          libraries lapack_atlas not found in /usr/lib
        customize UnixCCompiler
          libraries f77blas,cblas,atlas not found in /usr/lib
        <class 'numpy.distutils.system_info.atlas_info'>
          NOT AVAILABLE

          FOUND:
            extra_compile_args = ['-msse3', '-I/System/Library/Frameworks/vecLib.framework/Headers']
            extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
            define_macros = [('NO_ATLAS_INFO', 3), ('HAVE_CBLAS', None)]

        /usr/local/lib/python3.9/site-packages/setuptools/_distutils/dist.py:275: UserWarning: Unknown distribution option: 'define_macros'
          warnings.warn(msg)
        running install
        /usr/local/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
          warnings.warn(
        running build
        running config_cc
        unifing config_cc, config, build_clib, build_ext, build commands --compiler options
        running config_fc
        unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
        running build_src
        build_src
        building py_modules sources
        building library "npymath" sources
        get_default_fcompiler: matching types: '['gnu95', 'nag', 'absoft', 'ibm', 'intel', 'gnu', 'g95', 'pg']'
        customize Gnu95FCompiler
        Found executable /usr/local/bin/gfortran
        Traceback (most recent call last):
          File "<string>", line 2, in <module>
          File "<pip-setuptools-caller>", line 34, in <module>
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/setup.py", line 419, in <module>
            setup_package()
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/setup.py", line 411, in setup_package
            setup(**metadata)
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/core.py", line 171, in setup
            return old_setup(**new_attr)
          File "/usr/local/lib/python3.9/site-packages/setuptools/__init__.py", line 87, in setup
            return distutils.core.setup(**attrs)
          File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 148, in setup
            return run_commands(dist)
          File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 163, in run_commands
            dist.run_commands()
          File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 967, in run_commands
            self.run_command(cmd)
          File "/usr/local/lib/python3.9/site-packages/setuptools/dist.py", line 1229, in run_command
            super().run_command(command)
          File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 986, in run_command
            cmd_obj.run()
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/command/install.py", line 62, in run
            r = self.setuptools_run()
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/command/install.py", line 36, in setuptools_run
            return distutils_install.run(self)
          File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/command/install.py", line 670, in run
            self.run_command('build')
          File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/cmd.py", line 313, in run_command
            self.distribution.run_command(command)
          File "/usr/local/lib/python3.9/site-packages/setuptools/dist.py", line 1229, in run_command
            super().run_command(command)
          File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 986, in run_command
            cmd_obj.run()
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/command/build.py", line 47, in run
            old_build.run(self)
          File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/command/build.py", line 136, in run
            self.run_command(cmd_name)
          File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/cmd.py", line 313, in run_command
            self.distribution.run_command(command)
          File "/usr/local/lib/python3.9/site-packages/setuptools/dist.py", line 1229, in run_command
            super().run_command(command)
          File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 986, in run_command
            cmd_obj.run()
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/command/build_src.py", line 148, in run
            self.build_sources()
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/command/build_src.py", line 159, in build_sources
            self.build_library_sources(*libname_info)
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/command/build_src.py", line 292, in build_library_sources
            sources = self.generate_sources(sources, (lib_name, build_info))
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/command/build_src.py", line 375, in generate_sources
            source = func(extension, build_dir)
          File "numpy/core/setup.py", line 665, in get_mathlib_info
            st = config_cmd.try_link('int main(void) { return 0;}')
          File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/command/config.py", line 241, in try_link
            self._check_compiler()
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/command/config.py", line 80, in _check_compiler
            self.fcompiler = new_fcompiler(compiler=self.fcompiler,
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/fcompiler/__init__.py", line 884, in new_fcompiler
            compiler = get_default_fcompiler(plat, requiref90=requiref90,
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/fcompiler/__init__.py", line 855, in get_default_fcompiler
            compiler_type =  _find_existing_fcompiler(matching_compiler_types,
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/fcompiler/__init__.py", line 806, in _find_existing_fcompiler
            c.customize(dist)
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/fcompiler/__init__.py", line 530, in customize
            linker_so_flags = self.flag_vars.linker_so
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/fcompiler/environment.py", line 40, in __getattr__
            return self._get_var(name, conf_desc)
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/fcompiler/environment.py", line 56, in _get_var
            var = self._hook_handler(name, hook)
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/fcompiler/__init__.py", line 709, in _environment_hook
            return hook()
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/fcompiler/gnu.py", line 353, in get_flags_linker_so
            flags = GnuFCompiler.get_flags_linker_so(self)
          File "/private/var/folders/fc/29bg66sx4_x32gn5bfz_0fgh0000gn/T/pip-install-mnxg0uip/numpy_cdaa9579c1e345e6b85c29fc7af2b92d/numpy/distutils/fcompiler/gnu.py", line 144, in get_flags_linker_so
            os.environ['MACOSX_DEPLOYMENT_TARGET'] = target
          File "/usr/local/Cellar/python@3.9/3.9.13_1/Frameworks/Python.framework/Versions/3.9/lib/python3.9/os.py", line 684, in __setitem__
            value = self.encodevalue(value)
          File "/usr/local/Cellar/python@3.9/3.9.13_1/Frameworks/Python.framework/Versions/3.9/lib/python3.9/os.py", line 756, in encode
            raise TypeError("str expected, not %s" % type(value).__name__)
        TypeError: str expected, not int
        [end of output]

    note: This error originates from a subprocess, and is likely not a problem with pip.
  error: legacy-install-failure

  × Encountered error while trying to install package.
  ╰─> numpy

  note: This is an issue with the package mentioned above, not pip.
  hint: See above for output from the failure.
  WARNING: There was an error checking the latest version of pip.
  [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error

× pip subprocess to install build dependencies did not run successfully.
│ exit code: 1
╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.
WARNING: There was an error checking the latest version of pip.

And, following is NumPy info:
$pip show numpy
Name: numpy
Version: 1.23.1
Summary: NumPy is the fundamental package for array computing with Python.
Home-page: https://www.numpy.org
Author: Travis E. Oliphant et al.
Author-email:
License: BSD
Location: /usr/local/lib/python3.9/site-packages
Requires:
Required-by: cftime, h5py, matplotlib, netCDF4, pandas, ray, scipy, wradlib, xarray

Next is pip, and python versions:
$pip -V
pip 22.1.1 from /usr/local/lib/python3.9/site-packages/pip (python 3.9)

[molinav]

Hi @SongJaeIn! It looks like the problem is coming from the current build dependency definition in the pyproject.toml, because it is pinning to a very specific numpy version (v1.16.6 for Python 3.9), and your computer fails to build this numpy version from source. I think numpy/numpy#17987 is the issue that you are seeing on MacOS, which was not solved until numpy v1.21.0.

Your installed numpy library is newer (v1.23.1), which is perfectly normal. The original reason for being so specific with the numpy version for building is that we need to compile the distributed precompiled binary wheels with a very old numpy version to ensure that they work in as many computers as possible. For example, if the distributed wheels were compiled with numpy v1.23.1, later a user with numpy v1.19.5 would not be able to use them, but building basemap with an old numpy and later using basemap with a newer numpy does work. However, the combination of the former numpy bug on MacOS and the numpy pinning in the pyproject.toml is making you impossible to install basemap.

Probably the implementation in pyproject.toml is at the moment too overkilling, and it could be enough to replace the numpy requirements so that they use >= instead of ==. Anyhow in the GitHub workflows I install old numpy libraries on purpose before building basemap, so the workflows would not suffer with the change from == to >=.

[molinav]

@SongJaeIn Can you try installing from the latest commit in the repository? You can do:

python -m pip install https://github.com/matplotlib/basemap/archive/refs/heads/develop.zip#subdirectory=packages/basemap

After installing, I also recommend you do the simple test:

from mpl_toolkits import basemap

to ensure that the _geoslib extension was built properly and that you can import it.

[molinav]

Ok so my changes seem to break the current GitHub workflows... I will need to edit the pyproject.toml file with specific build dependencies for MacOS.

[SongJaeIn]

with your help, installation of Basemap was successful
However, when I test with
from mpl_toolkits import basemap
an error about _geoslib appears.

RuntimeError Traceback (most recent call last)
RuntimeError: module compiled against API version 0x10 but this version of numpy is 0xf

SystemError Traceback (most recent call last)
Input In [1], in <cell line: 1>()
----> 1 from mpl_toolkits.basemap import Basemap

File /usr/local/lib/python3.9/site-packages/mpl_toolkits/basemap/init.py:53, in
51 import numpy as np
52 import numpy.ma as ma
---> 53 import _geoslib
54 import functools
56 # basemap data files now installed in lib/matplotlib/toolkits/basemap/data
57 # check to see if environment variable BASEMAPDATA set to a directory,
58 # and if so look for the data there.

SystemError: execution of module _geoslib raised unreported exception

above is the error.

[molinav]

@SongJaeIn Can you try once again with the same command? I have just updated the pyproject.toml file because my first attempt was not successful and it also broke the builds for Windows and GNU/Linux. Now the pyproject.toml file looks like this:

basemap/packages/basemap/pyproject.toml

Line 6 in bd8b7be

'numpy == 1.21.4; sys_platform == "darwin" and (python_version >= "3.7" and python_version <= "3.9")',

so now your computer should try to build basemap using numpy v1.21.4, which should be compilable on MacOS. And once built, you should be able to use basemap with any newer numpy. First ensure to uninstall the broken basemap:

python -m pip uninstall basemap
python -m pip install https://github.com/matplotlib/basemap/archive/refs/heads/develop.zip#subdirectory=packages/basemap
python -c "from mpl_toolkits import basemap; print(basemap)"

[molinav]

RuntimeError Traceback (most recent call last)
RuntimeError: module compiled against API version 0x10 but this version of numpy is 0xf

@SongJaeIn By the way, this RuntimeError is the reason why in the beginning we pin to very old numpy versions when building. It also gave me a bit of headaches in the past but was solved for Windows and GNU/Linux. Unfortunately I did not have a Mac around to also test the solution on Mac at that time, and you were unlucky that MacOS had this build problem with numpy until v1.21.0.

[SongJaeIn]

@molinav Now it works perfectly. Thank you very much.
and I am willing to test your new builds in MacOS in the future.
Thank you again, have a great weekend!

[molinav]

Great to hear that, @SongJaeIn! When I get some more time, I will prepare a patch release v1.3.4 with this correction and then you will be able to install basemap with pip as you were trying to do in the beginning.

[ihaseeburrehman]

Great to hear that, @SongJaeIn! When I get some more time, I will prepare a patch release v1.3.4 with this correction and then you will be able to install basemap with pip as you were trying to do in the beginning.

@molinav I have installed Basemap -1.3.6+dev
when I try python -c "from mpl_toolkits import basemap; print(basemap)"
it gave me this
<module 'mpl_toolkits.basemap' from '/opt/homebrew/Caskroom/miniconda/base/envs/matplot/lib/python3.10/site-packages/mpl_toolkits/basemap/init.py'>

but when I try to test Basemap in Anaconda it says 'module not found'
Furthermore , I tried pip install Basemap , it was unsuccessful (cc1: fatal error: src/_geoslib.c: No such file or directory)
I set environment
export GEOS_DIR=/opt/homebrew/Cellar/geos/3.11.1/

I have Mac with M1-max running Ventura 13.0.1

Appreciate if you can advise.

thanks

[molinav]

Hi @ihaseeburrehman! I am not sure if I am understanding the issue. Do you have separate installations of Python, a normal one (e.g. from Homebrew, I assume Miniconda based on the basemap module path) and another one coming from Anaconda?

The installation procedure for Miniconda and Anaconda should be the same in both cases on MacOS with M1. Since there are no precompiled wheels or conda packages for MacOS M1, you need to install basemap from the source distribution in PyPI with:

python -m pip install basemap

or it is even better if you install the dependencies manually with conda install and later do:

python -m pip install --no-deps basemap

Since you were able to install basemap for Miniconda, you seem to also have a working C/C++ compiler available to build the _geoslib module, so this is also not an issue. If you provide more feedback I can try to help a bit more.

[ihaseeburrehman]

Hi Thanks for your response.
Let me try again to explain my issue
in Mac terminal I have successfully installed basemap and also passed the test by executing the following command
python -c "from mpl_toolkits import basemap; print(basemap)"
I have attached the terminal window screenshot.

But when I tried in Anaconda (Spyder)
from mpl_toolkits import basemap

it says
ImportError: cannot import name 'basemap' from 'mpl_toolkits' (unknown location)

I have attached the Spyder kernal screenshot.

I am wondering why anaconda (Spyder) is not importing basemap from mpl_toolkits.

[molinav]

Thanks for the additional feedback, @ihaseeburrehman. The issue is that basemap is installed only in one of your Python installations:

• basemap is installed for your Python from the /opt/homebrew/Caskroom/miniconda/base installation (Miniconda).
• Spyder3 is using your Python from the /opt/anaconda3 installation (Anaconda3), for which basemap is not installed.

The Python installations do not share packages, each has its own installation path. To have basemap in Spyder3, you need to install it for the appropriate Python installation, i.e. you need to do python -m pip install basemap after being sure that "python" does point to the Anaconda3 Python, not to the Miniconda one.

You can check where Python is pointing to with:

command -v python