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matt-sd-watson/README.md

Hi there 👋

I am a programmer in the genomics data sciences and an aspiring data scientist with experience in:

cancer genomics
🐛 public health pathogen analysis
💻 single cell multi-omics


🔬 By day: data analysis, pipeline engineering, coding, statistics, CI/CD
🎓 By night: pursuing an online MSc. in Data Science, University of Texas at Austin
Off the clock: I can be found in a 🛶 or seeking a new international adventure ✈️. Almost always looking for a good 🍺.




Check out some of my software packages!

🏎️ FASTAfurious
🍄 spora
🔀 nf-processes


Also check out some of the public Github software that I have contributed to!

🦔 pangolin
🌲 ggtree
🔎 civet/civet3
snipit
📶 infercnv

Pinned

  1. 🎄Visualization and annotation of phylogenetic trees

    R 661 158

  2. Software package for assigning SARS-CoV-2 genome sequences to global lineages.

    Python 360 98

  3. modules for processing and analyzing single cell data using Nextflow

    Nextflow 1

  4. spora Public

    🍄 spora: Streamlined Phylogenomic Outbreak Report Analysis

    Python 1

  5. 🏎️ Bundled utilities for manipulation and integration of FASTA files

    Python 2

  6. beernanza Public

    memory match tile app implemented using a Swing-based GUI and object oriented concepts

    Java 1

869 contributions in the last year

Oct Nov Dec Jan Feb Mar Apr May Jun Jul Aug Sep Mon Wed Fri

Contribution activity

September 2022

Created an issue in r-lib/actions that received 1 comment

setup-r-dependencies has highly variable time to completion within larger actions workflow

I have a GA workflow for checking an R package with the following run configuration: jobs: run-test-that: runs-on: ubuntu-latest steps: - uses: act…

1 comment
Opened 1 other issue in 1 repository
72 contributions in private repositories Sep 1 – Sep 23

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