IBL Python Libraries

Description

Library used to implement the International Brain Laboratory data pipeline. Currently in active development. The library as currently 4 main modules:

• brainbox: neuroscience analysis oriented library
• ibllib: general purpose library containing I/O, signal processing and IBL data pipelines utilities.
• oneibl: interface to the Alyx database of experiments to access IBL data.
• alf: implementation of ALF file naming convention Release Notes here

Requirements

OS: Deployed on Linux and Windows. Minimally tested for Mac.

Python Module: Python 3.6 or higher, we develop on 3.7.

Documentation

https://ibllib.readthedocs.io/en/latest/

Installation

https://ibllib.readthedocs.io/en/latest/02_installation_python.html#

Demonstration

https://ibllib.readthedocs.io/en/latest/_static/one_demo.html

Contribution and development practices

See developper's installation guide here: https://ibllib.readthedocs.io/en/latest/02_installation_dev_python.html

We use gitflow and Semantic Versioning.

Before commiting to your branch:

• run tests
• flake8 This is also enforced by continuous integration.

Matlab Library

The Matlab library has moved to its own repository here: https://github.com/int-brain-lab/ibllib-matlab/