ctf-apms

Clone the repository

git clone https://github.com/mepittman/ctf-apms/

If using conda as a package manager (recommended):

cd ctf-apms/; conda create --name ctf_env --file requirements.txt; source activate ctf_env

Download data and create necesssary folders

python setup.py

Interact with code

cd jupyter_notebooks/; jupyter notebook

Notebooks that should be run before any others:

1. define_interactome.ipynb
2. variant_comparison.ipynb