Linux

Dependencies

• NCBI-BLAST

  To install NCBI-BLAST directly, run following command

  sudo apt install ncbi-blast+
  

  or one can install it from source ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/

• GLPK-utils

  MinPath requires GLPK (GNU Linear Programming Kit) package. The easiest way to install it by using following command

  sudo apt install glpk-utils
  

Installing MicFunPred

• Install from source

  git clone git@github.com:microDM/MicFunPred.git
  cd MicFunPred
  python setup.py install