rename importers to standardize "import" terminology

[thpralas]

rename following importers :

• loadFromBiom --> importBIOM

• loadFromQIIME2 --> importQIIME2

• readQZA --> importQZA

• loadfromMothur --> importMothur

• loadFromMetaphlan --> importMetaphlan

• loadFromHumann --> importHumann

[TuomasBorman]

SImilarly to other functions, add the olds function to deprecate.R

Also, I am thinking if importHumann and importMetaphlan should be importHUMAnN and importMetaPhlAn @antagomir

I think we should follow their naming convention even though it is harder to remember the correct naming. It is more clear that the function imports the HUMAnN data

[TuomasBorman]

Have run devtools::document()

It seems that yu have changed the name of importHUMAnN document but the file name is not updated in man folder

[codecov]

Codecov Report

Attention: Patch coverage is 43.90244% with 46 lines in your changes are missing coverage. Please review.

❗ No coverage uploaded for pull request base (devel@1d01162). Click here to learn what that means.

❗ Current head b91e221 differs from pull request most recent head a9e0921. Consider uploading reports for the commit a9e0921 to get more accurate results

Files	Patch %	Lines
R/deprecate.R	0.00%	18 Missing ⚠️
R/importMetaphlan.R	0.00%	10 Missing ⚠️
R/importHumann.R	25.00%	6 Missing ⚠️
R/importMothur.R	76.92%	6 Missing ⚠️
R/importQIIME2.R	45.45%	6 Missing ⚠️

Additional details and impacted files

@@           Coverage Diff            @@
##             devel     #505   +/-   ##
========================================
  Coverage         ?   72.82%           
========================================
  Files            ?       40           
  Lines            ?     4648           
  Branches         ?        0           
========================================
  Hits             ?     3385           
  Misses           ?     1263           
  Partials         ?        0           

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[TuomasBorman]

@antagomir

[TuomasBorman]

Change loadFromQZA to readQZA, then good to go

[TuomasBorman]

@antagomir

[antagomir]

Ok to me when the above points are resolved.