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Batch transformations. #429 #618

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merged 34 commits into from
Sep 21, 2024
Merged

Batch transformations. #429 #618

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10ebc25
#601 and OMA #482
ake123 Jul 10, 2024
38b1a00
Merge branch 'microbiome:devel' into devel
ake123 Jul 10, 2024
bfeeafb
correction to indentation
ake123 Jul 10, 2024
7f7cb44
Merge remote-tracking branch 'origin' into devel
ake123 Jul 10, 2024
2316ecb
remove all the changes to the diversities
ake123 Jul 10, 2024
10be9b9
Merge branch 'microbiome:devel' into devel
ake123 Jul 12, 2024
338d7d8
index validation
ake123 Jul 12, 2024
dd5c307
Merge branch 'microbiome:devel' into devel
ake123 Jul 15, 2024
e3a417e
correction as suggested
ake123 Jul 15, 2024
2053998
Merge branch 'microbiome:devel' into devel
ake123 Jul 19, 2024
5e59cc8
Update addAlpha.R
TuomasBorman Jul 22, 2024
cbdb378
Merge branch 'devel' into devel
ake123 Jul 22, 2024
6db8dd7
Update addAlpha.R
ake123 Jul 23, 2024
3f5bcb5
Merge branch 'devel' into devel
ake123 Jul 24, 2024
c3c4973
Merge branch 'devel' into devel
antagomir Jul 30, 2024
705c55a
Merge branch 'microbiome:devel' into devel
ake123 Jul 30, 2024
cd0fe47
Batch transformations. #429
ake123 Jul 30, 2024
260d42b
correcting the unit tests for transformassay
ake123 Jul 31, 2024
32f5602
adding documentation on altexp
ake123 Jul 31, 2024
6182358
adding documentation on altexp
ake123 Jul 31, 2024
8fc7e58
Merge branch 'devel' into devel
ake123 Aug 12, 2024
6ff7265
Merge branch 'microbiome:devel' into devel
ake123 Aug 18, 2024
bfbca49
Batch transformations corrections
ake123 Aug 28, 2024
df8f7bc
Merge branch 'microbiome:devel' into devel
ake123 Sep 2, 2024
5e11004
correction to transformasssay
ake123 Sep 6, 2024
df15567
Merge remote-tracking branch 'origin' into devel
ake123 Sep 6, 2024
8a0a695
up
TuomasBorman Sep 9, 2024
5263ab4
Merge branch 'devel' into devel
TuomasBorman Sep 9, 2024
1692395
Merge branch 'devel' into devel
TuomasBorman Sep 10, 2024
3c19d3f
Merge branch 'devel' into devel
Daenarys8 Sep 19, 2024
a657d16
up
TuomasBorman Sep 21, 2024
3ac46d3
up
TuomasBorman Sep 21, 2024
181e5b9
up
TuomasBorman Sep 21, 2024
09e1a9b
fix indentation
TuomasBorman Sep 21, 2024
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2 changes: 1 addition & 1 deletion DESCRIPTION
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
Package: mia
Type: Package
Version: 1.13.40
Version: 1.13.41
Authors@R:
c(person(given = "Felix G.M.", family = "Ernst", role = c("aut"),
email = "felix.gm.ernst@outlook.com",
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1 change: 1 addition & 0 deletions NEWS
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Expand Up @@ -153,3 +153,4 @@ computation
+ new methods getNMF and addNMF for NMF ordination with feature loadings
computation
+ If missing values, give informative error in *RDA/*CCA functions
+ transformAssay can apply transformation to altExp
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