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1. picard picard Public

   Forked from broadinstitute/picard

   A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

   Java

2. MultiQC MultiQC Public

   Forked from MultiQC/MultiQC

   Aggregate results from bioinformatics analyses across many samples into a single report.

   Python

3. pandoc-latex-template pandoc-latex-template Public

   Forked from Wandmalfarbe/pandoc-latex-template

   A pandoc LaTeX template to convert markdown files to PDF or LaTeX.

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4. htsjdk htsjdk Public

   Forked from samtools/htsjdk

   A Java API for high-throughput sequencing data (HTS) formats.

   Java

5. nextflow nextflow Public

   Forked from nextflow-io/nextflow

   A DSL for data-driven computational pipelines

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6. dagr dagr Public

   Forked from fulcrumgenomics/dagr

   A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs

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