#DEETO This is a simplified version of DEETO. It should be fully compliant with Slicer 3D, via command line execution.

seeg electroDE rEconstruction TOol:

This tool reconstructs the position of SEEG electrode contacts from a post-implant Cone-beam CT scan.

USAGE: 

   deeto  [-ct <string>] [-t/-e/-l/-h x y z] [-m -m n l r x1..xm]
          [-h]

Where 
   -h       : shows the menu 
   -t x y z : target point (x,y,z) are the coordinates 
   -e x y z : entry point (x,y,z) are the coordinates 
   -l x y z : tail point (x,y,z) are the coordinates 
   -h x y z : head point (x,y,z) are the coordinates 
   -m n l r x1..xm :
      	n = number of contacts 
            l = contact lenght  
            r = contact radius  
            x1..xm = contact distances, x1 is the distance between c1 and c2  
   -ct file :
          computer tomography file name 
   -h        : This menu

  Notice that : 
 (*)  one between -e and -h is mandatory
 (*)  one between -t and -l is mandatory
 (*)  -ct is mandatory

##Software Requirements Strong dependecies:

Library	Version	URL
Cmake	2.8	download
ITK	4.3.1	download

The version should be intended as a suggestion (ie we developped and tested with these) but any minor revision of the above mentioned library should work as well.

For Debian- and RedHat-based distribution use apt-get or yum to install the required libraries. If you want to proceed with the manual installation follow the steps below.

##MANUAL INSTALLATION

###Download and Install ITK

Download the latest ITK files from ITK website Extract all ITK files and enter in the unpacked directory. For an easier cleanup process create a build directory where the code will be compiled that can be removed later on when the entire process has finished

$ mkdir ./build && cd ./build

####Default configuration $ cmake ../ ( assuming standard installation path and configurations) ####Advanced configuration $ ccmake ../ to call the ncursed configuration gui.

	Press c to configure the ITK setup. After configuration process press c again.

	Press g to generate and exit from configuration window.

Once the process has ended, and the Makefile has been created in your directory

$ make 
$ sudo make install

You can now clean the build directory, assuming that you are still within it, as normal user type

$ rm -Rf *

###Build and Run

Build the project with cmake as we have done before with ITK

$ cmake CMakeLists.txt

$ make

Run the generated executable file in directory bin