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Popular repositories

  1. Cassiopeia_LFQ Cassiopeia_LFQ Public

    R script to perform standard analysis steps for label-free proteomics data

    5 2

  2. BulkRNAseqAnalysis_from_countMatrix BulkRNAseqAnalysis_from_countMatrix Public

    R Markdown script to perform bioinformatic analysis on RNA-seq raw count matrices, including DE-testing via DESeq2 and gene set enrichment analysis (GSEA).

    R 2

  3. InterferenceModeling_in_MultiplexProteomics InterferenceModeling_in_MultiplexProteomics Public

    Workflow to perform interference modeling and interference correction for MS2-based multiplex proteomics data

    R 1 1

  4. Simple_MetaStudy Simple_MetaStudy Public

    R script to perform simple meta analysis on multiple individually curated bioinformatics datasets

  5. SiteToProteinNormalization_in_MultiplexProteomics SiteToProteinNormalization_in_MultiplexProteomics Public

    Workflow to perform unbiased site-to-protein normalization in multiplex proteomics by accounting for ratio compression effects due to ion interference

    R 1

  6. Miscellaneous_Proteomics Miscellaneous_Proteomics Public

    Various functions and scripts etc. for quantitative proteomics (LFQ and multiplex proteomics) data analysis

    R