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Add the namespace to these parameters so they're loaded properly. You can see that the namespace is needed here:
https://github.com/ros-planning/moveit2/blob/d59a46372c5a3c088a61732f5c8f152f67778c34/moveit_ros/planning/robot_model_loader/src/robot_model_loader.cpp#L124
joint_limits.yaml is optional. It overrides values in the URDF in case you want custom limits for your robot. It also allows a jerk limit to be specified, which you cannot do from the URDF.
Fixes #122