Use Actually Portable Executable and inspiration from "A guide to ICO/PDF polyglot files" in Paged Out to create a PDF file that you can both view in a PDF viewer and execute from the command line.
When viewed in a PDF viewer, it's a PDF document that can contain whatever PDF content you wish to publish.
When executed from the command line, the PDF runs an executable program that is embedded in it. This can be any program you wish to compile in ape format.
Try out the example hello.pdf
in Linux:
evince hello.pdf
This shows:
Now try running the same file from the command line, as though it was a program:
./hello.pdf
It runs, and confirms that I'm not making this whole thing up:
[mwenge@mwenge ExecutablePDF (master)]$ ./hello.pdf
I'm also a little Computer Program!
It also runs on Windows 11:
If you want to recreate it for yourself, try the Jupyter notebook.