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test: speed up magicgui forward ref tests #4662

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merged 2 commits into from
Jun 10, 2022

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tlambert03
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Description

This dramatically speeds up the magicgui ForwardRef tests by avoiding the use of subprocesses.

The use of subprocess was to mimic a clean slate when magicgui reaches a forward ref pointing to a napari type name. Here we create that clean slate by mocking/clearing sys.modules instead

@github-actions github-actions bot added the tests Something related to our tests label Jun 9, 2022
@tlambert03
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@Carreau, test failures here are kinda unrelated to this PR, they come back to test_expected_number_of_layer_methods and #4644 (the number of found methods has gone down... i guess as a side-effect).

Since it's unrelated, and the "expected" values in those dicts seem to just be "whatever makes the test pass", I'm going to change those values, ok?

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codecov bot commented Jun 9, 2022

Codecov Report

Merging #4662 (0850c9e) into main (1546f18) will increase coverage by 1.77%.
The diff coverage is 100.00%.

@@            Coverage Diff             @@
##             main    #4662      +/-   ##
==========================================
+ Coverage   86.05%   87.82%   +1.77%     
==========================================
  Files         585      585              
  Lines       50073    50098      +25     
==========================================
+ Hits        43089    43998     +909     
+ Misses       6984     6100     -884     
Impacted Files Coverage Δ
napari/_tests/test_viewer.py 95.95% <ø> (ø)
napari/_tests/test_magicgui.py 95.97% <100.00%> (+0.19%) ⬆️
napari/plugins/pypi.py 45.61% <0.00%> (-0.82%) ⬇️
napari/utils/config.py 100.00% <0.00%> (ø)
napari/layers/utils/string_encoding.py 100.00% <0.00%> (ø)
napari/components/experimental/monitor/_api.py 0.00% <0.00%> (ø)
napari/utils/_tests/test_key_bindings.py 96.49% <0.00%> (+0.02%) ⬆️
napari/layers/utils/_color_encoding.py 93.75% <0.00%> (+0.06%) ⬆️
napari/layers/utils/style_encoding.py 96.26% <0.00%> (+0.07%) ⬆️
napari/layers/shapes/_tests/test_shapes_utils.py 97.22% <0.00%> (+0.07%) ⬆️
... and 65 more

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@tlambert03 tlambert03 requested a review from Carreau June 9, 2022 16:35
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Carreau commented Jun 10, 2022

Looks great in https://pytest-viewer.fly.dev/gh/napari/napari/pull/4662 ! test_mgui use less than 5% now, and the total walltime is 77min.

@Carreau Carreau merged commit 3e13e45 into napari:main Jun 10, 2022
@tlambert03 tlambert03 deleted the faster-mgui-tests branch June 10, 2022 10:08
@Carreau Carreau added this to the 0.4.17 milestone Jun 23, 2022
tlambert03 added a commit to tlambert03/napari that referenced this pull request Jul 8, 2022
* Clean status message after leave canvas (napari#4607)

* Raise error when rgb True but data not correct dims (napari#4630)

* add ci for asv benchmark suite (napari#4554)

* add ci for asv benchmark suite

* ignore git-lfs stuff?

* split qt from non-qt

* asv: provide custom uninstall command too

* fix yml

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* disable build_command

* underscore...

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* setup qt libs

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* add asv quick checks to PR CI

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* adjust conf path

* fix asv check

* better comment

* add asv run quick to see how long it takes

* asv machine first

* split into another job

* oops typo

* move 'asv checks' to comprehensive

* used sed -E for linux/osx compat

* fix time_on_mouse_move

* skip some tests due to OOM on CI

* handle OOM errors in Labels3DSuite too

* increase timeout

* remove None case from TextManagerSuite

* prevent out of bounds error by allowing only one run per setup in time_remove_as_batch

* configure for label-based triggers

* draft support for scheduled runs and workflow_dispatch

* typo

* fix assigned var

* add delegated workflow that enables comments on PR

* message.txt only needed in PRs

* add some more comments

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* do not indent that if

* explicit timeout

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* Speed up notebook display tests  (napari#4641)

* test: speed up notebook test by not using viewer to check alt text

* style: pre-commit

* Remove sleep and wait with default timeout instead (napari#4638)

* Update installation instruction in documentation (napari#4639)

* update information about minimal python version

* add information about conda PySide2 install

* Update docs/tutorials/fundamentals/installation.md

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* pull out alt-text parameters from viewer

* test: speed up notebook test by not using viewer to check alt text

* style: pre-commit

* magicgui tests work with xdist

* move magicgui test

* refactor keybindings test

* split tests

* fix mac

* fix tox params, and viewer test

* cancel previous  runs

* bump codecov

* explicit backends

* fix win 3.10

* mac to 3.9

* try pip

* fix extra name

* back to tox

* back to tox

* fix env factors

* undo some changes

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* 3.10 for mac

* try xdist

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* add tests for qt_progress_bar.py

* coverage _get_value

* More updates to the ignored translations file and translation CI infrastructure (napari#4596)

* rewrite JSON, sorting keys

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* update json removing nonexisting strings

* fix a couple of pytest fixtures

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Just to make sure we don't block testing PRs with main

Mitigate napari#4653

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* test: speed up magicgui forward ref tests (napari#4662)

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* Fix docs for shape/points layer properties (napari#4659)

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* Also fix current_opacity to opacity

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* feat: add codespace

* fix: fix check manifest

* Alternate fix for alt-text issues (napari#4617)

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Bumps [peter-evans/create-pull-request](https://github.com/peter-evans/create-pull-request) from 3 to 4.
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* ci(dependabot): bump docker/build-push-action from 2.5.0 to 3

Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 2.5.0 to 3.
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- [Release notes](https://github.com/docker/metadata-action/releases)
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* Remove unused points _color state (napari#4666)

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* Also remove unneeded addition

* Add function back

* Clean up PR

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* test: Cleanup usage of npe2 plugin manager in tests (napari#4669)

* fix: fix manifest reader extensions

* test: fix tests

* add warning

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* remove mistake file

* update another test

* fix another test

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* some more, but not all, fixed

* remove comment

* change napari builtins display name

* simplify get_potential_readers

* fix one more test

* skip some tests

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* fix another qt test

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* remove tmp_reader

* more reduction

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* fix file menu

* add comments

* remove breakpoint

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* remove napari hook implementation

* fix test_get_writer

* sort writer extensions

* remove initialize stuff

* fix cli show test

* bump svg

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* use npe2 0.4.0

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* remove xfail

* add comment

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* remove from experimental chunk

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* bunch more

* remove more

* add back one

* bump npe2, use new features (napari#4686)

* Remove `restore_settings_on_exit` test util (napari#4673)

* fix: fix manifest reader extensions

* test: fix tests

* add warning

* add warning

* remove mistake file

* update another test

* fix another test

* revert napari#4575

* some more, but not all, fixed

* remove comment

* change napari builtins display name

* simplify get_potential_readers

* fix one more test

* skip some tests

* fix typecheck

* fix qt tests

* fix another qt test

* starting on new pm fixtures.  working sample hook

* update save layers and test reader plugins

* plugins module working

* remove tmp_reader

* more reduction

* finish viewer model

* update qt dialogs

* finish qt_extension2reader

* fix file menu

* add comments

* remove breakpoint

* fix layers

* fix components

* add builtins to examples test

* remove restore_settings_on_exit

* add comment

* remove napari hook implementation

* fix test_get_writer

* sort writer extensions

* remove initialize stuff

* fix cli show test

* bump svg

* fix test

* remove unneeded line

* fix test

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* Keep order of layers when select to save multiple selected layers (napari#4689)

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* honor confirm close settings on quit

* update string

* Update napari/settings/_application.py

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* Update napari/settings/_application.py

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* add comment

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* add warning

* add warning

* remove mistake file

* update another test

* fix another test

* revert napari#4575

* some more, but not all, fixed

* remove comment

* change napari builtins display name

* simplify get_potential_readers

* fix one more test

* skip some tests

* fix typecheck

* fix qt tests

* fix another qt test

* remove breakpoint

* remove napari hook implementation

* fix test_get_writer

* update docs

* add trans

* add requires restart

* use requires_restart

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* Apply shown mask to points._view_size_scale

* Added two tests for points related to the view_size and shown

* Add test case for view_size if no point is shown

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* Merge two tests into one for view_size

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* remove print (napari#4718)

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* more cache

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* use cache in comprehensive too

* remove verbose

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* Background box under scale bar to improve legibility

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* Now possible to change the color of scale bar and surrounding box

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* updated test and clean up for box visibility

* scale bar color now managing all allowed color formats. Tests updated

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* Removed unused import of Union

* Simplify logic and add docs

* Make colors non-optional

* Fix initial box color

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* napari.viewer.current_viewer fallback ancestor (napari#4715)

* napari.viewer.current_viewer fallback ancestor

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* Fix test_magicgui_get_viewer

This was broken as it now returns current_viewer where it did not
before. Now, we ensure that a parent-less widget returns current_viewer,
  and a child widget returns its parent viewer

* Test current_viewer behavior

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* address comments and fix grammar

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* Color edit without tooltip fix (napari#4717)

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* bump version

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* Fix bug in deepcopy of utils.context.Expr (napari#4730)

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* fix repr test on 3.8

* fix test again

* Update napari/utils/context/_expressions.py

* try to fix typing

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* Tracks tail update fix beyond _max_length (napari#4688)

* Auto-update _max_length upon setting tail_length

* Remove tail_length clipping by _max_length upon update

* Move track display limits to constructor

* - Auto-update _max_length upon setting head_length
- Remove head_length clipping by _max_length upon update

* Add test cases for length change

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* split Image `interpolation` on two properties, `interpoltion2d` and `interpolation3d`  (napari#4725)

* add name migration mechanism

* split interpolation on 2 properties

fix tests

* make interpolation event deprecated

* add remove version to `rename_argument` decorator

* verify if only one name of argument is used

* change to deprecation warnings

* make interpolation getter deprecated

* move intepolation event to new setters

* add type annotation for better refactor support

* fix test

* fix tox file

* fix tox 2

* fix tox 3

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* Fix `_get_state` for empty Vectors and Points layers (napari#4748)

* Add a public API for the setGeometry method of _qt_window (napari#4729)

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* Do not inform about coverage untill all CI jobs are done (napari#4751)

* do not inform about coverage untill all jobs are done

* fix codecov.yaml

* reduce number

* Allow pandas.Series as properties values (napari#4755)

* Allow pandas.Series as properties values

* Add numpy array to the tests and mixed cases

* Add series property tests to points layer

* Adjust according to reviews

* Remove debug prints

* ci(dependabot): bump docker/login-action from 1.9.0 to 2 (napari#4774)

Bumps [docker/login-action](https://github.com/docker/login-action) from 1.9.0 to 2.
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  update-type: version-update:semver-major
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* ci(dependabot): bump bruceadams/get-release from 1.2.2 to 1.2.3 (napari#4773)

Bumps [bruceadams/get-release](https://github.com/bruceadams/get-release) from 1.2.2 to 1.2.3.
- [Release notes](https://github.com/bruceadams/get-release/releases)
- [Commits](bruceadams/get-release@v1.2.2...v1.2.3)

---
updated-dependencies:
- dependency-name: bruceadams/get-release
  dependency-type: direct:production
  update-type: version-update:semver-patch
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* ci(dependabot): bump actions/github-script from 5 to 6 (napari#4772)

Bumps [actions/github-script](https://github.com/actions/github-script) from 5 to 6.
- [Release notes](https://github.com/actions/github-script/releases)
- [Commits](actions/github-script@v5...v6)

---
updated-dependencies:
- dependency-name: actions/github-script
  dependency-type: direct:production
  update-type: version-update:semver-major
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* ci(dependabot): bump actions/download-artifact from 2 to 3 (napari#4771)

Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 2 to 3.
- [Release notes](https://github.com/actions/download-artifact/releases)
- [Commits](actions/download-artifact@v2...v3)

---
updated-dependencies:
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  dependency-type: direct:production
  update-type: version-update:semver-major
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* ci(dependabot): bump styfle/cancel-workflow-action from 0.9.1 to 0.10.0 (napari#4770)

Bumps [styfle/cancel-workflow-action](https://github.com/styfle/cancel-workflow-action) from 0.9.1 to 0.10.0.
- [Release notes](https://github.com/styfle/cancel-workflow-action/releases)
- [Commits](styfle/cancel-workflow-action@0.9.1...0.10.0)

---
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  dependency-type: direct:production
  update-type: version-update:semver-minor
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* Make references to examples link there (napari#4767)

* docs/index: fix references to main branch

* Make references to examples folder link there

* fix clim init for dask arrays (napari#4724)

* fix clim init for dask arrays

* fix tensorstore

* avid double-calculation

* add test for clim

* move test to dask and make sync only

* use normalize_dtype

* Set focus on `QtViewer` object after creating main window (napari#4768)

* Add missed call of `running_as_bundled_app` in `__main__` (napari#4777)

* Add public API for dims transpose (napari#4727)

* Update dims.py

Add public API for dims transpose

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* Remove _transpose usage, deprecate it and fix typos

* Fix typo

* Update napari/components/dims.py

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* [pre-commit.ci] auto fixes from pre-commit.com hooks

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* Update dims.py

Remove old _transpose private method

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* Use `npe2 list` to show plugin info (napari#4739)

* use npe2 list for plugin info

* bump npe2

* fix test

* fix test

* Fix source of copied layer events by use `layer.as_layer_data_tuple` (napari#4681)

* Fixing readme typo (napari#4791)

* readd ensure_unique

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