National Cancer Informatics Program

  • Official repository for GDC User Guides in Markdown format

    JavaScript 37 21 Updated Sep 20, 2017
  • Python 7 7 Updated Sep 1, 2017
  • caTissue Suite is a modular, open-source, specimen inventory and tracking system.

    Java 4 35 Updated Aug 21, 2017
  • The NCI Metathesaurus (NCIm) Browser is a web-based terminology browser that allows users to browse and search the NCI Metathesaurus, a biomedical terminology database that maps terms from more than 70 terminology sources into some 1.5 million biomedical concepts.

    Java 2 6 Updated Aug 2, 2017
  • diff specific for CDISC reports

    Java 1 4 Updated Jun 22, 2017
  • A CTS2 Framework Service Plugin based on LexEVS

    Java 5 6 Updated Jun 14, 2017
  • A remote (RMI) access wrapper around LexEVS.

    Java 8 Updated Jun 14, 2017
  • The LexEVS Terminology Service.

    Logos 6 15 Updated Jun 14, 2017
  • caNanoLab is a web-based portal designed to capture nanotechnology data.

    Java 3 4 Updated May 26, 2017
  • Created as per request NCI-RITM0065579 as part of SVN to GitHub migration

    JavaScript Updated May 18, 2017
  • Created as per request NCI-RITM0065579

    Updated May 18, 2017
  • Java Updated Apr 13, 2017
  • Ruby Updated Apr 13, 2017
  • Files needed for Galaxy tools used to run Trinity_CTAT workflows.

    JavaScript 1 5 Updated Apr 13, 2017
  • Java Updated Apr 12, 2017
  • The NCI Term Browser is a web-based browser that allows users to search all terminologies, value sets and mappings on the LexEVS terminology server, to browse individual sources, and to easily follow the many links that connect them.

    Java 1 6 Updated Apr 10, 2017
  • HTML 1 Updated Apr 6, 2017
  • HTML 1 Updated Apr 5, 2017
  • JavaScript 9 15 Updated Feb 2, 2017
  • The National Biomedical Imaging Archive (NBIA) is a free and open source service and software application that enables users to securely store, search, and download diagnostic medical images, providing a searchable national repository integrating in vivo cancer images with clinical and genomic data. Using role-based security, NBIA provides web-b…

    Java 8 18 Updated Jan 10, 2017
  • To support the Clinical Proteomic Tumor Analysis Consortium (CPTAC) program

    2 Updated Dec 6, 2016
  • The NCI Term Suggestion application is used both standalone and in the EVS terminology browsers to get community feedback and contributions to both NCI and EVS partner terminology products.

    Java 5 Updated Nov 10, 2016
  • Generic version of the CDR, updated to remove study-specific references

    Groovy 1 2 Updated Nov 10, 2016
  • Alview : Alignment View for BAM files - a fast,portable tool for viewing short reads as native GUI program, command line or via webserver

    C 5 1 Updated Jul 8, 2016
  • slncky

    Forked from slncky/slncky

    slncky is a tool for lncRNA discovery from RNA-Seq data. slncky filters a high-quality set of noncoding transcripts, discovers lncRNA orthologs, and characterizes conserved lncRNA evolution.

    Python 8 Updated Apr 19, 2016
  • Annotation and Image Markup (AIM) is the first project to propose and create a standard means of adding information and knowledge to an image in a clinical environment, so that image content can be easily and automatically searched.

    C++ 13 18 Updated Mar 10, 2016
  • The caGrid2 project includes enhancements to the caGrid core services to support WS* and SHA2, which enables the National Cancer Informatics Platform's interoperability strategy.

    Java 1 2 Updated Mar 9, 2016
  • The caCORE Software Development Kit (SDK) generates a system built on the principles of Model Driven Architecture (MDA), n-tier architecture and a common API for data access. When the caCORE SDK-generated system is combined with controlled vocabularies and registered metadata, the resulting software system, called "caCORE-like" system, is "seman…

    JavaScript 3 5 Updated Mar 9, 2016
  • The Pathway Interaction Database (PID) is software supporting the access and display of information about bio-molecular interactions and cellular processes assembled into signaling pathways.

    Perl 8 8 Updated Jan 11, 2016
  • The NCI EVS Report Writer is a web-based tool that allows users to generate reports from terminologies available through the LexEVS terminology server; it supports download and printing to a variety of file types and formats.

    Java 4 Updated Dec 22, 2015