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Thanks for testing everything so thoroughly. Your exiftool output shows exactly what went wrong with the merged DNGs, and my last reply was wrong about them.

The 10 KB PreviewImage is a 256 px thumbnail. The 4672×7008 Image Size is the merged image itself, not the preview. Since version 13, Lightroom Classic compresses every image inside a merged HDR/Panorama DNG as JPEG XL, previews included. The only ordinary JPEG left is that thumbnail, which is below the 1024 px Facet needs, so the exiftool fallback still skipped DSC05485-HDR.dng and the others. I reproduced this with a real Lightroom Classic 13.1 merge from an α7 IV.

This is fixed in 1.17.0 "Fusion", which also contains everything fr…

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@ncoevoet
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@maisun
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