- lab1 - interactive brain viewer and MRI modalities, FFT
- lab2 - affine transform, image registration and application
- lab3 - functional localization using bold fMRI
- lab4 - image enhancement and segmentation
- final - visual cortex decoding (mind reading using bold fMRI)
- bonus - 3D surface reconstruction in Unity (marching cubes)
- numpy - https://github.com/Kyubyong/numpy_exercises
- numpy - https://github.com/rougier/numpy-100
- matplotlib - https://github.com/rougier/matplotlib-tutorial
- matplotlib - https://matplotlib.org/tutorials/index.html
- seaborn - https://seaborn.pydata.org/tutorial.html
- Nilearn - https://nilearn.github.io/
- MRI crash course at Albert Einstein College of Medicine - Youtube video series
- FSL - https://fsl.fmrib.ox.ac.uk/fsl/fslwiki
- AFNI Academy - https://www.youtube.com/channel/UC40RiNZN7_dCuB6Lg7HJl1g/
- AFNI Training Bootcamp - https://cbmm.mit.edu/afni
- Andy's brain blog - https://www.youtube.com/c/AndrewJahn/playlists
- HIPR2 - https://homepages.inf.ed.ac.uk/rbf/HIPR2/index.htm