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Welcome to the NeuroHub Wiki

The aim of this documentation is to provide a step by step instructions in order to access and use NeuroHub, including the upload and analysis of MRI data. It is roughly divided into four parts: Getting Started, How to access NeuroHub, Examples and Supplementary Information. Once successfully registered, you can access the portal here. If you have questions regarding this documentation, please contact neurohub-support@mcin.ca.

Table of Contents

1. Getting started

1. Get a NeuroHub account
2. Obtain UKBiobank access

2. Using NeuroHub

1. Available Tools and Datasets
2. Access NeuroHub
3. Creating a project
4. LORIS Data Query Tool (DQT)
5. Jupyter Notebooks in NeuroHub
6. Messaging in NeuroHub
7. Accessing the Canadian Open Neuroscience Platform (CONP) datasets
8. Accessing the HCP (Human Connectome Project) datasets
9. Accessing the UK Biobank dataset
10. Accessing the ABCD dataset
11. Accessing the OpenNeuro dataset

3. Examples

1. Analyses of structural data
2. Cellranger Count
3. scRNAbox
4. BraTSPipeline

4. Supplementary Information

5. Direct access to the UK Biobank data

1. Available Data
2. An example of extracting ICD codes from UK Biobank tabular data
3. Accessing Imaging Data
4. Processing Data directly on Rorqual

6. NeuroHub and Machine Learning

7. Acknowledging NeuroHub