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This PR rewrites most of
augur/export.py
, incorporating ideas @rneher and I discussed in Basel. I think it's easier to understand and, as a bonus, will be easier to modify as we change the schema. This PR was necessitated by work on WNV which didn't work with current master (see slack for WNV stuff).Main changes:
attach_tree_meta_data
is removed fromutils
and not imported bytiters.py
(where it was never called)colors.tsv
but not in any tree nodes are not exported.augur export
APII've tested this on WNV & zika. @emmahodcroft could you take a look with TB?