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Establish some deduplication guidelines within the phylogenetic workflow #30

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j23414 opened this issue Feb 21, 2024 · 1 comment
Open

Establish some deduplication guidelines within the phylogenetic workflow #30

j23414 opened this issue Feb 21, 2024 · 1 comment
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enhancement New feature or request

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j23414 commented Feb 21, 2024

Context

Flagged by #28 (comment) as well as prior historical discussions.

Design and implement some deduplication paths in the phylogentic workflow.

Description

Examples

Possible solution

Preferably, leverage the existing tools in the nextstrain dockerfile, with seqkit being a probable choice.
@j23414 j23414 added the enhancement New feature or request label Feb 21, 2024
@j23414 j23414 mentioned this issue Feb 22, 2024
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j23414 commented Jun 6, 2024

Flagging some duplicates form a slack message here

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