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ENH: Reconstruct Nextclade Pango Lineage on internal nodes #1011

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corneliusroemer opened this issue Oct 6, 2022 · 0 comments

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corneliusroemer commented Oct 6, 2022

It's great we now have Nextclade Pango Lineage as coloring in ncov.

Could be useful to also color branches = internal nodes.

I have a script for that, that takes aliases etc into account, so if you have BA.5.2 and BA.5.3 tips, it decides the internal node has BA.5 etc

The script is here: https://github.com/neherlab/nextclade_data_workflows/blob/master/sars-cov-2/scripts/internal_pango.py

It may need to be adapted slightly but it should work well - it's what I use in Nextclade after all.

corneliusroemer added the enhancement label

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