Skip to content
This repository has been archived by the owner on Aug 8, 2018. It is now read-only.

Implement some kind of validation tests #36

Closed
ewels opened this issue Jul 11, 2018 · 1 comment
Closed

Implement some kind of validation tests #36

ewels opened this issue Jul 11, 2018 · 1 comment

Comments

@ewels
Copy link
Member

ewels commented Jul 11, 2018

It would be nice to add in some checks for pipeline output files when -profile test is used. This will need to be specific for all pipelines, but we could add an example here.

I think the simplest would be to have a bunch of processes which are downstream of the normal ones and have when: workflow.process.contains('test') set so that they don't run normally.

See extensive discussion on nextflow gitter from here.

@ewels
Copy link
Member Author

ewels commented Aug 8, 2018

This issue was moved to nf-core/tools#94

@ewels ewels closed this as completed Aug 8, 2018
Sign up for free to subscribe to this conversation on GitHub. Already have an account? Sign in.
Projects
None yet
Development

No branches or pull requests

1 participant