Release 2.2.0 #136
Release 2.2.0 #136
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Template update 2.12
Co-authored-by: Júlia Mir Pedrol <mirp.julia@gmail.com>
Crisprcleanr different input (csv and defined library)
…into bowtie_bis
Co-authored-by: Júlia Mir Pedrol <mirp.julia@gmail.com>
Co-authored-by: Júlia Mir Pedrol <mirp.julia@gmail.com>
Add bowtie2 in screening
…to mageckFlute
add empty reads_counts
fix prlotter, pattern doesn't exist
| meta.id = "${meta.treatment}_vs_${meta.reference}" | ||
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| """ | ||
| #!/usr/bin/env Rscript |
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Consider putting this in a separate file in bin, a la carte scripts are technically allowed, but not really pretty
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hey @itrujnara i'm looking into this now, and i was wondering if it's not a bit less readable since we have variables? Would you just take the whole R script as it is right now and put it in matricecreations.R in bin for instance?
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I would say making it a template under templates is the best in this case. This way, you can continue using the same nextflow variable interpolation.
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i just find it's less readable to understand what the module is doing? Is there a specific reason why we don't want any code in the script part?
| def prefix = task.ext.prefix ?: "${meta.treatment}_vs_${meta.reference}" | ||
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| """ | ||
| #!/usr/bin/env Rscript |
avoid converting T nucleotides to TRUE
Update test_screening_paired.config
| @@ -3,11 +3,34 @@ | |||
| The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) | |||
| and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). | |||
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| ## [v2.2.0 - Romarin Curie] | |||
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Just a reminder that it needs to be updated with the release date 😄
| @@ -209,8 +209,8 @@ def report_bagel_version(): | |||
| """ | |||
| print( | |||
| "Bayesian Analysis of Gene EssentiaLity (BAGEL) suite:\n" | |||
| "Version: {VERSION}\n" | |||
| "Build: {BUILD}".format(VERSION=VERSION, BUILD=BUILD) | |||
| f"Version: {VERSION}\n" | |||
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Not sure if you have already tried, but won't be nice to try to add it to bioconda and thus the corresponding modules could be added to the modules repository. Found this issue were someone tried in the past but seems not to be there yet. Maybe not for this release but for a future one.
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Hey we opened an issue for it :
#155
Update mageck modules with nf-test
add suggestions from code review
PR checklist
nf-core lint).nextflow run . -profile test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).