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don't want to skip FRiP score calculation #226

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jdanaK opened this issue Jan 14, 2024 · 1 comment
Closed

don't want to skip FRiP score calculation #226

jdanaK opened this issue Jan 14, 2024 · 1 comment

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@jdanaK
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jdanaK commented Jan 14, 2024

Hi,
This is my first time run nf-core/cutandrun and I would like to know why FRiP score calculation was skipped with my data.
Here is my command code and I ran the nextflow with 4 samples

sudo nextflow run nf-core/cutandrun -profile docker --input samplesheet_test.csv --outdir ./results --genome GRCh38 --peakcaller seacr,MACS2

My teammate also ran nf-core/cutandrun with same samples at 1 year ago, and he got FRiP scores
here is his command

nextflow run nf-core/cutandrun --input samplesheet.csv --outdir output --genome GRCh37 -profile docker

I don't know why FRiP score calculation is skipped in my run
I tried with GRCh37 again, but it doesn't work
I'm new to informatics and Github so if more informations are needed, let me know
Thanks

the versions of my tools
Nextflow version 23.10.0
nf-core/cutandrun version 3.2.1

@chris-cheshire
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Hi thanks for your message, if you could repost this message in the nf-core slack channel that would be great. Could you post your sample sheet as well so I can debug

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