Adds Bowtie2 to address #476
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| trim5 = "${params.bt2_trim5}" != 0 ? "--trim5 ${params.bt2_trim5}" : "" | ||
| trim3 = "${params.bt2_trim3}" != 0 ? "--trim3 ${params.bt2_trim3}" : "" | ||
| bt2n = "${params.bt2n}" != 0 ? "-N ${params.bt2n}" : "" | ||
| bt2l = "${params.bt2l}" != 0 ? "-L ${params.bt2l}" : "" |
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I've addressed this in the docs and doesn't require update because it overrides the default from --bt2_sensitivity i.e. if you supply a value here it will override the default, otherwise the -N parameter is not supplied.
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Co-authored-by: Alexander Peltzer <apeltzer@users.noreply.github.com>
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Co-authored-by: Maxime Borry <maxibor@users.noreply.github.com>
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Anymore @maxibor ?(heh, rhyming) |
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