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Default runtime limit for predicting possible neoepitopes is too short #94

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Leon-Bichmann opened this issue Jan 27, 2020 · 0 comments · Fixed by #100

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Leon-Bichmann commented Jan 27, 2020

The default runtime limit for the processes:
"predict_possible_neoepitopes" and "predict_possible_classII_neoepitopes"

is too low since querying the Biomart API for large vcf files can exceed this limit.

However, currently it is possible to raise the runtime by specifying a runtime profile with the -c parameter.

Leon-Bichmann mentioned this issue

Feature/template merge #100

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Zethson linked a pull request

that will close this issue

Feature/template merge #100

Merged

Zethson closed this as completed

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